Al_scaffold_0003_2798 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Al_scaffold_0003_2798 T000320_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN

NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.691 0.787
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC

GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.688 0.766
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_2798 AP2 142 189

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.695
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.695
Pm018608 Prunus mume Pm018608 I 0.695
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.691
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.691
Bo9g141100 Brassica oleracea Bo9g141100 I 0.691
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.691
TOE2 Arabidopsis thaliana AT5G60120 D 0.691
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.691
Bra002510 Brassica rapa Bra002510 I 0.691
Bra020262 Brassica rapa Bra020262 I 0.691
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.688
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.688
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.688
SMZ Arabidopsis thaliana AT3G54990 D 0.688
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.688
Bra007123 Brassica rapa Bra007123 I 0.688
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.688
Bo8g087280 Brassica oleracea Bo8g087280 I 0.688
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.688
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.688
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.686
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.686
MDP0000281079 Malus domestica MDP0000281079 I 0.685
MDP0000285955 Malus domestica MDP0000285955 I 0.685
PK16652.1 Cannabis sativa PK16652.1 I 0.684
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.684
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.684
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.684
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.684
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.684
Cla020387 Citrullus lanatus Cla020387 I 0.684
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.684
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.683