CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Al_scaffold_0003_2798
(
Arabidopsis lyrata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Al_scaffold_0003_2798
T000320_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.691
0.787
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.688
0.766
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0003_2798
AP2
142
189
SQYRGVTFYRRTGRWESHIFNFVNPIGGFDTAHAAAAYDRAAVKFRGL
Links
Other
AP2
family TFs
Other
Arabidopsis lyrata
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy