ABI4 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Al_scaffold_0004_2621 T000321_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
abi4
M02648_2.00 		Zea mays
CGSYGCYBYB
VRVRGCRSCG		 SELEX
Mathelier et al.(2014)
MA0123.1 		0.782 0.920
abi4
M09706_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI4_01 		0.782 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0004_2621 AP2 54 105

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.825
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.825
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.825
ABI4 Arabidopsis thaliana AT2G40220 I 0.825
Bo3g034810 Brassica oleracea Bo3g034810 I 0.815
Bra004978 Brassica rapa Bra004978 I 0.815
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.815
Bra000178 Brassica rapa Bra000178 I 0.815
Bo4g025410 Brassica oleracea Bo4g025410 I 0.815
29814.m000739 Ricinus communis 29814.m000739 I 0.802
cassava41265.m1 Manihot esculenta cassava41265.m1 I 0.802
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.802
Pm018953 Prunus mume Pm018953 I 0.802
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.802
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.802
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.802
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.802
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.802
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.802
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.802
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.802
MDP0000225376 Malus domestica MDP0000225376 I 0.802
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.802
TCM_042471 Theobroma cacao TCM_042471 I 0.802
mgf024416m Mimulus guttatus mgf024416m I 0.799
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.793
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.792
MDP0000628484 Malus domestica MDP0000628484 I 0.792
Cla006708 Citrullus lanatus Cla006708 I 0.792
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.792
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.789
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.789
Lus10009834.g Linum usitatissimum Lus10009834.g I 0.786
Ca_12465 Cicer arietinum Ca_12465 I 0.786
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.786
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.784
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.782
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.782
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.782
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.782
abi4 Zea mays GRMZM2G093595 D 0.782
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.782
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.782
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I 0.782
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.782
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.782
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.782
ABI4 Oryza sativa OS05G0351200 I 0.782
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.782
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.777
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.777
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.777
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.743
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.741
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.732
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I 0.727
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I 0.727