AMTR_s00021p00223240 (Amborella trichopoda)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AMTR_s00021p00223240 T000354_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN

NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.749 0.880
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA

TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.749 0.880
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.677 0.740
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.677 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN14075 AP2 56 107

Links

Other AP2 family TFs
Other Amborella trichopoda TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.770
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.762
Bra033274 Brassica rapa Bra033274 I 0.762
Bo5g002600 Brassica oleracea Bo5g002600 I 0.762
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.762
TCM_005130 Theobroma cacao TCM_005130 I 0.762
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.758
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.758
Bo8g117810 Brassica oleracea Bo8g117810 I 0.758
PK15554.1 Cannabis sativa PK15554.1 I 0.758
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.758
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.754
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.754
Pm018354 Prunus mume Pm018354 I 0.754
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.754
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.754
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.750
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.750
29742.m001400 Ricinus communis 29742.m001400 I 0.750
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.749
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.749
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.749
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.749
ERF023 Arabidopsis thaliana AT1G01250 D 0.749
mgf020568m Mimulus guttatus mgf020568m I 0.749
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.747
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.746
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.746
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.746
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.746
Ca_17638 Cicer arietinum Ca_17638 I 0.745
Bra032630 Brassica rapa Bra032630 I 0.745
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.744
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.743
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.741
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.737
Ca_01325 Cicer arietinum Ca_01325 I 0.734
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.721
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.718
TCM_036269 Theobroma cacao TCM_036269 I 0.718
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.717
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.705
MDP0000283350 Malus domestica MDP0000283350 I 0.703
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.703
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.702
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.701
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.699
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.699
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.699
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.698
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.696
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.695
28118.m000034 Ricinus communis 28118.m000034 I 0.695
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.694
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.694
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.694
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.694
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.691
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.691
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.691
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.691
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.691
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.690
Bra016136 Brassica rapa Bra016136 I 0.690
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.690
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.690
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.689
Pm004269 Prunus mume Pm004269 I 0.684
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.684
Bo6g113020 Brassica oleracea Bo6g113020 I 0.683
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.683
Cla012665 Citrullus lanatus Cla012665 I 0.683
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.682
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.681
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.681
Bo8g027240 Brassica oleracea Bo8g027240 I 0.680
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.678
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.678
Cla012661 Citrullus lanatus Cla012661 I 0.678
ERF021 Arabidopsis thaliana AT1G71450 D 0.677
Bo2g072910 Brassica oleracea Bo2g072910 I 0.677
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.677
SELMODRAFT_26594 Selaginella moellendorffii SELMODRAFT_26594 I 0.677
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.677
SELMODRAFT_26604 Selaginella moellendorffii SELMODRAFT_26604 I 0.677
Pm004272 Prunus mume Pm004272 I 0.677
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.677
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.677