CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00040p00195730
(
Amborella trichopoda
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AMTR_s00040p00195730
T000365_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.682
0.780
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.682
0.780
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.682
0.780
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN13151
AP2
169
220
PVFRGVRQRKGGKWVCEIREPHKKTRIWLGTYTCPEMAARAHDVAVIALRGK
Links
Other
AP2
family TFs
Other
Amborella trichopoda
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00095p00096190
Amborella trichopoda
AMTR_s00095p00096190
I
0.748
TCM_041493
Theobroma cacao
TCM_041493
N
0.727
Aquca_027_00400
Aquilegia coerulea
Aquca_027_00400
N
0.709
GLYMA13G39540
Glycine max
GLYMA13G39540
I
0.703
GLYMA12G30740
Glycine max
GLYMA12G30740
I
0.703
Gorai.003G162700
Gossypium raimondii
Gorai.003G162700
I
0.695
GLYMA12G30710
Glycine max
GLYMA12G30710
I
0.692
cassava41218.m1
Manihot esculenta
cassava41218.m1
I
0.692
POPTR_0004s19820
Populus trichocarpa
POPTR_0004s19820
I
0.689
Aquca_122_00012
Aquilegia coerulea
Aquca_122_00012
I
0.687
DREB1C
Arabidopsis thaliana
AT4G25470
D
0.682
Cla002362
Citrullus lanatus
Cla002362
I
0.682