AMTR_s00040p00195730 (Amborella trichopoda)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AMTR_s00040p00195730 T000365_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.682 0.780
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.682 0.780
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.682 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN13151 AP2 169 220

Links

Other AP2 family TFs
Other Amborella trichopoda TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
DREB1C Arabidopsis thaliana AT4G25470 D 0.682
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.748
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.687
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.692
Cla002362 Citrullus lanatus Cla002362 I 0.682
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.695
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.689
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.703
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.703
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.692
Aquca_027_00400 Aquilegia coerulea Aquca_027_00400 N 0.709
TCM_041493 Theobroma cacao TCM_041493 N 0.727