DREB1F (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G12610 T000404_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
(Direct) (Direct)
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
(Direct) (Direct)
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
(Direct) (Direct)
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
(Direct) (Direct)
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.865 1.000
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.787 0.840
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.735 0.840
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD

HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.735 0.840
DREB1E
M09702_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.735 0.840
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.703 0.760
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.703 0.760
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.703 0.760
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.703 0.760
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.701 0.760
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.701 0.760
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.686 0.720
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.686 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00840_2.00 AP2 28 79
M00962_2.00 AP2 28 79

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G12610.1 AP2 28 79

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0000297301 Angiostrongylus cantonensis ACAC_0000297301 I 0.000
ACOC_0000878601 Angiostrongylus costaricensis ACOC_0000878601 I 0.000
ANCCAN_12400 Ancylostoma caninum ANCCAN_12400 I 0.000
ANCCEY_11797 Ancylostoma ceylanicum ANCCEY_11797 I 0.000
ASIM_0001248901 Anisakis simplex ASIM_0001248901 I 0.000
ASU_04764 Ascaris suum ASU_04764 I 0.000
BXY_0004500 Bursaphelenchus xylophilus BXY_0004500 I 0.000
CBG03381 Caenorhabditis briggsae CBG03381 I 0.000
CGOC_0001138001 Cylicostephanus goldi CGOC_0001138001 I 0.000
CJA18545 Caenorhabditis japonica CJA18545 I 0.000
CRE30014 Caenorhabditis remanei CRE30014 I 0.000
EVEC_0001300201 Enterobius vermicularis EVEC_0001300201 I 0.000
Hba_03543 Heterorhabditis bacteriophora Hba_03543 I 0.000
Hba_20459 Heterorhabditis bacteriophora Hba_20459 I 0.000
HCOI00493000 Haemonchus contortus HCOI00493000 I 0.000
HCOI00602900 Haemonchus contortus HCOI00602900 I 0.000
HCOI01956800 Haemonchus contortus HCOI01956800 I 0.000
HPBE_0000455001 Heligmosomoides bakeri HPBE_0000455001 I 0.000
HPLM_0000698001 Haemonchus placei HPLM_0000698001 I 0.000
L596_g25360 Steinernema carpocapsae L596_g25360 I 0.000
L889_g19153 Steinernema feltiae L889_g19153 I 0.000
L892_g27590 Steinernema scapterisci L892_g27590 I 0.000
L893_g6833 Steinernema glaseri L893_g6833 I 0.000
L898_g6334 Steinernema monticolum L898_g6334 I 0.000
NBR_0000615901 Nippostrongylus brasiliensis NBR_0000615901 I 0.000
NBR_0000982201 Nippostrongylus brasiliensis NBR_0000982201 I 0.000
NECAME_02595 Necator americanus NECAME_02595 I 0.000
NECAME_08769 Necator americanus NECAME_08769 I 0.000
OESDEN_12332 Oesophagostomum dentatum OESDEN_12332 I 0.000
PPA11400 Pristionchus pacificus PPA11400 I 0.000
scaffold54-EXSNAP2012.9 Pristionchus exspectatus scaffold54-EXSNAP2012.9 I 0.000
SMUV_0001084001 Syphacia muris SMUV_0001084001 I 0.000
SVUK_0000682301 Strongylus vulgaris SVUK_0000682301 I 0.000
dmd-9 Caenorhabditis elegans WBGene00022060 D 0.000