CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DREB1F
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT1G12610
T000404_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
(Direct)
(Direct)
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
(Direct)
(Direct)
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
(Direct)
(Direct)
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
(Direct)
(Direct)
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.865
1.000
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.787
0.840
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.735
0.840
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.735
0.840
DREB1E
M09702_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.735
0.840
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.703
0.760
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.703
0.760
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.703
0.760
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.703
0.760
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.701
0.760
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.701
0.760
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.686
0.720
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.686
0.720
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00840_2.00
AP2
28
79
PVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGR
M00962_2.00
AP2
28
79
PVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G12610.1
AP2
28
79
PVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGR
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
149 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy