CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ADAP
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT1G16060
T000409_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.704
0.726
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.704
0.726
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.679
0.726
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.679
0.726
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G16060.1
AP2
57
117
SVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGR
AT1G16060.1
AP2
159
211
SKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
AT1G16060.2
AP2
25
77
SKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
AT1G16060.3
AP2
16
47
ADSSRAVYLGAYDEEDAAARAYDLAALKYWGR
AT1G16060.3
AP2
89
141
SKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
AT1G16060.4
AP2
25
77
SKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
AT1G16060.5
AP2
25
77
SKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
AT1G16060.6
AP2
25
77
SKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
AT1G16060.7
AP2
9
55
CRHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGL
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
396 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy