RAP2-1 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G46768 T000424_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
(Direct) (Direct)
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.737 0.880
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.736 0.880
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.736 0.880
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.736 0.860
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.736 0.860
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.734 0.880
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.734 0.880
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.734 0.880
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.734 0.880
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.715 0.860
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.715 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G46768.1 AP2 29 80
AT1G46768.2 AP2 29 80
AT1G46768.3 AP2 29 80

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28718.m000038 Ricinus communis 28718.m000038 I 0.748
30170.m013843 Ricinus communis 30170.m013843 I 0.759
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.757
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.759
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.707
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.707
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.716
Bo1g004940 Brassica oleracea Bo1g004940 I 0.728
Bo4g151460 Brassica oleracea Bo4g151460 I 0.737
Bo7g063980 Brassica oleracea Bo7g063980 I 0.736
Bo7g118430 Brassica oleracea Bo7g118430 I 0.737
Bo8g079660 Brassica oleracea Bo8g079660 I 0.736
Bo9g020380 Brassica oleracea Bo9g020380 I 0.730
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.736
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.779
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.737
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.678
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.698
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.737
Bra011744 Brassica rapa Bra011744 I 0.703
Bra012140 Brassica rapa Bra012140 I 0.725
Bra014056 Brassica rapa Bra014056 I 0.770
Bra017811 Brassica rapa Bra017811 I 0.737
Bra032173 Brassica rapa Bra032173 I 0.737
Bra036061 Brassica rapa Bra036061 I 0.736
Bra037124 Brassica rapa Bra037124 I 0.730
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.716
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.707
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.736
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.736
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.779
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.737
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.737
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.737
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.779
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.736
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.737
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.736
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.723
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.759
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.759
Ca_01556 Cicer arietinum Ca_01556 I 0.772
Ca_02170 Cicer arietinum Ca_02170 I 0.722
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.736
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.765
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.748
Cla014175 Citrullus lanatus Cla014175 I 0.702
Cla020550 Citrullus lanatus Cla020550 I 0.697
Cla020961 Citrullus lanatus Cla020961 I 0.770
Cla022937 Citrullus lanatus Cla022937 I 0.768
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.702
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.770
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.697
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.768
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.736
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.737
ERF008 Arabidopsis thaliana AT2G23340 D 0.734
ERF010 Arabidopsis thaliana AT5G67190 D 0.736
ERF011 Arabidopsis thaliana AT3G50260 D 0.736
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.772
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.754
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.754
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.748
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.764
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.749
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.720
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.741
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.719
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.741
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.720
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.770
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.707
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.766
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.748
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.777
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.748
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.770
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.777
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.684
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.707
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.683
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.707
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.743
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.736
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.719
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.697
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.684
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.687
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.743
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.732
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.720
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.754
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.748
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.707
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.716
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.697
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.757
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.759
MDP0000125673 Malus domestica MDP0000125673 I 0.749
MDP0000179962 Malus domestica MDP0000179962 I 0.749
MDP0000756341 Malus domestica MDP0000756341 I 0.741
mgf000289m Mimulus guttatus mgf000289m I 0.743
mgf006561m Mimulus guttatus mgf006561m I 0.734
mgf021115m Mimulus guttatus mgf021115m I 0.740
mgf025363m Mimulus guttatus mgf025363m I 0.730
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.708
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.753
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.772
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.722
OBART06G04460 Oryza barthii OBART06G04460 I 0.716
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.707
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.716
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.707
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.707
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.716
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.716
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.748
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.765
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.707
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.716
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.716
OS04G0648900 Oryza sativa OS04G0648900 I 0.707
OS06G0166400 Oryza sativa OS06G0166400 I 0.716
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.707
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.716
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.707
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.716
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.738
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.743
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.727
PK15612.1 Cannabis sativa PK15612.1 I 0.763
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.759
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.723
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.723
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.759
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.745
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.751
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.737
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.715
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.822
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.737
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.715
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.757
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.759
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.723
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.709
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.709
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.759
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.707
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.716
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.743
TCM_000669 Theobroma cacao TCM_000669 I 0.748
TCM_033791 Theobroma cacao TCM_033791 I 0.772
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.695
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.736
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.737
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.723
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.708
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.709
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.713