CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ERF056
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT2G22200
T000448_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.786
0.880
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.786
0.880
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.776
0.860
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G22200.1
AP2
69
120
NLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGD
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
428 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy