RAP2.7 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT2G28550 T000451_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.698 0.972
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.734 0.889
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.712 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00845_2.00 AP2 152 201
M00845_2.00 AP2 244 295

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G28550.1 AP2 152 201
AT2G28550.1 AP2 244 291
AT2G28550.2 AP2 152 201
AT2G28550.2 AP2 244 268
AT2G28550.3 AP2 152 201
AT2G28550.3 AP2 244 295
AT2G28550.4 AP2 152 201
AT2G28550.4 AP2 244 288
AT2G28550.5 AP2 11 35
AT2G28550.5 AP2 78 125
AT2G28550.6 AP2 152 201
AT2G28550.6 AP2 244 268

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.861
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.861
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.855
Bra011939 Brassica rapa Bra011939 I 0.846
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.846
Bo4g070350 Brassica oleracea Bo4g070350 I 0.846
OS05G0121600 Oryza sativa OS05G0121600 I 0.844
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.844
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.844
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.844
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.844
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.844
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.844
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.844
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.844
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.844
Ca_02499 Cicer arietinum Ca_02499 I 0.844
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.844
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.844
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.844
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.844
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.844
28752.m000339 Ricinus communis 28752.m000339 I 0.844
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.844
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.844
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.844
Si025305m.g Setaria italica Si025305m.g I 0.844
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.844
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.843
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.843
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.843
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.843
TCM_022077 Theobroma cacao TCM_022077 I 0.843
Pm002492 Prunus mume Pm002492 I 0.843
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.843
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.843
MDP0000200319 Malus domestica MDP0000200319 I 0.843
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.843
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.843
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.841
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.841
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.841
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.841
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.841
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.841
PK07183.1 Cannabis sativa PK07183.1 I 0.841
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.841
Ca_14618 Cicer arietinum Ca_14618 I 0.840
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.840
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.840
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.839
MDP0000181606 Malus domestica MDP0000181606 I 0.839
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.839
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.839
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.839
Pm000974 Prunus mume Pm000974 I 0.839
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.839
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.838
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.838
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.838
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.838
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.838
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.838
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.838
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.838
Cla018124 Citrullus lanatus Cla018124 I 0.838
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.838
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.838
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.838
OS07G0235800 Oryza sativa OS07G0235800 I 0.838
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.838
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.838
OBART07G08110 Oryza barthii OBART07G08110 I 0.838
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.838
F775_32962 Aegilops tauschii F775_32962 I 0.838
TCM_042000 Theobroma cacao TCM_042000 I 0.838
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.837
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.837
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.837
Bra011741 Brassica rapa Bra011741 I 0.837
29805.m001494 Ricinus communis 29805.m001494 I 0.837
Ca_09295 Cicer arietinum Ca_09295 I 0.837
Bo7g118400 Brassica oleracea Bo7g118400 I 0.837
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.837
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.837
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.837
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.837
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.837
AP2 Arabidopsis thaliana AT4G36920 I 0.837
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.837
Bra017809 Brassica rapa Bra017809 I 0.837
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.837
Bo1g004960 Brassica oleracea Bo1g004960 I 0.837
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.836
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.836
Si036068m.g Setaria italica Si036068m.g I 0.836
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.836
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.836
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.836
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.836
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.836
PK02403.1 Cannabis sativa PK02403.1 I 0.836
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.836
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.836
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.836
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.836
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.836
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.836
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.836
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.836
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.836
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.836
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.836
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.836
Cla000716 Citrullus lanatus Cla000716 I 0.836
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.836
mgf009315m Mimulus guttatus mgf009315m I 0.835
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.835
mgf021945m Mimulus guttatus mgf021945m I 0.835
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.835
Si029636m.g Setaria italica Si029636m.g I 0.834
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.834
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.834
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.834
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.834
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.834
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.834
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.834
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.834
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.834
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.834
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.833
TCM_000665 Theobroma cacao TCM_000665 I 0.833
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.833
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.831
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.831
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.831
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.831
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.830
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.829
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.828
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.828
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.828
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.828
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.828
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.828
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.828
Si012635m.g Setaria italica Si012635m.g I 0.828
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.828
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.828
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.828
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.827
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.827
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.827
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.827
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.827
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.826
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.826
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.826
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.826
29169.m000017 Ricinus communis 29169.m000017 I 0.825
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.825
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.825
OB03G45870 Oryza brachyantha OB03G45870 I 0.825
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.824
Ca_12010 Cicer arietinum Ca_12010 I 0.824
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.823
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.822
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.822
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.822
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.822
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.821
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.821
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.821
mgf005133m Mimulus guttatus mgf005133m I 0.820
MDP0000137561 Malus domestica MDP0000137561 I 0.820
mgf010466m Mimulus guttatus mgf010466m I 0.820
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.819
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.819
Pm030172 Prunus mume Pm030172 I 0.819
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.819
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.819
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.818
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.816
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.816
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.816
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.816
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.816
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.814
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.814
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.814
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.814
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.814
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.814
OB06G29960 Oryza brachyantha OB06G29960 I 0.814
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.813
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.812
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.812
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.812
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.811
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.806
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.805
MDP0000163645 Malus domestica MDP0000163645 I 0.805
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.800
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.800
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.800
Bra012139 Brassica rapa Bra012139 I 0.799
Bo7g064000 Brassica oleracea Bo7g064000 I 0.799
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.799
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.799
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.798
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.796
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.795
Cla020549 Citrullus lanatus Cla020549 I 0.795
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.793
OS03G0818800 Oryza sativa OS03G0818800 I 0.792
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.792
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.792
P93632_MAIZE Zea mays P93632_MAIZE D 0.791
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.791
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.791
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.789
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.786
TOE3 Arabidopsis thaliana AT5G67180 I 0.785
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.785
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.785
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.785
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.785
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.784
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.781
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.781
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.780
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.780
Cla018549 Citrullus lanatus Cla018549 I 0.776
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.768
Bostr.27991s0069 Boechera stricta Bostr.27991s0069 N 0.737
RAP2.7 Arabidopsis lyrata fgenesh2_kg.4__825__AT2G28550.1 N 0.737
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.714
Solyc09g007260.2 Solanum lycopersicum Solyc09g007260.2 N 0.705
ORUFI05G01620 Oryza rufipogon ORUFI05G01620 N 0.705
ONIVA05G01600 Oryza nivara ONIVA05G01600 N 0.705
OGLUM05G01570 Oryza glumaepatula OGLUM05G01570 N 0.705
OMERI05G01620 Oryza meridionalis OMERI05G01620 N 0.705
TCM_043051 Theobroma cacao TCM_043051 N 0.702
PK14490.1 Cannabis sativa PK14490.1 I 0.698
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.698
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.692
Bo3g040110 Brassica oleracea Bo3g040110 N 0.692
Cla013460 Citrullus lanatus Cla013460 N 0.689
cassava42433.valid.m1 Manihot esculenta cassava42433.valid.m1 N 0.687
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.682
Si006371m.g Setaria italica Si006371m.g I 0.681