SNZ (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT2G39250 T000457_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.801 0.939
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.788 0.898
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G39250.1 AP2 107 157
AT2G39250.2 AP2 107 157

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.889
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.889
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.860
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.860
Bo6g068410 Brassica oleracea Bo6g068410 I 0.819
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.801
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.801
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.801
Bra007123 Brassica rapa Bra007123 I 0.801
SMZ Arabidopsis thaliana AT3G54990 D 0.801
Bo8g087280 Brassica oleracea Bo8g087280 I 0.801
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.801
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.801
Pm018608 Prunus mume Pm018608 I 0.798
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.798
MDP0000281079 Malus domestica MDP0000281079 I 0.798
MDP0000285955 Malus domestica MDP0000285955 I 0.798
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.797
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.794
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.791
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.791
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.788
Bra020262 Brassica rapa Bra020262 I 0.788
Bo9g141100 Brassica oleracea Bo9g141100 I 0.788
Bra002510 Brassica rapa Bra002510 I 0.788
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.788
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.788
TOE2 Arabidopsis thaliana AT5G60120 D 0.788
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.788
PK16652.1 Cannabis sativa PK16652.1 I 0.787
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.787
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.787
Cla020387 Citrullus lanatus Cla020387 I 0.787
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.787
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.787
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.787
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.786
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.781
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.781
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.776
Ca_26761 Cicer arietinum Ca_26761 I 0.751