AT2G40350 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT2G40350 T000460_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2C
M00846_2.00
Arabidopsis thaliana
NNRCCGNNN

NNNCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DREB2C
0.703 0.898
DREB2C
M01049_2.00
Arabidopsis thaliana
VRCCGVCW

WGBCGGYB
PBM
Sullivan et al.(2014)
pTH9747
0.703 0.898
DREB2C
M06611_2.00
Arabidopsis thaliana
DCCDCCRCCDHYDCCRCCDCM

KGHGGYGGHRDHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
ERF48_col_a
0.703 0.898
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.681 0.735
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.677 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G40350.1 AP2 65 116
AT2G40350.2 AP2 72 123

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CIMG_05222 Coccidioides immitis CIMG_05222 N 0.000
MBR_05191 Metarhizium brunneum MBR_05191 N 0.000
MGU_01481 Metarhizium guizhouense MGU_01481 N 0.000
NechaG37658 Fusarium solani NechaG37658 N 0.000
OCS_04571 Ophiocordyceps sinensis OCS_04571 N 0.000
OIDMADRAFT_40435 Oidiodendron maius OIDMADRAFT_40435 N 0.000
SBOR_9003 Sclerotinia borealis SBOR_9003 N 0.000
TRIREDRAFT_21255 Trichoderma reesei TRIREDRAFT_21255 N 0.000
TRIVIDRAFT_30070 Trichoderma virens TRIVIDRAFT_30070 N 0.000
UCRPA7_4111 Togninia minima UCRPA7_4111 N 0.000
UV8b_706 Ustilaginoidea virens UV8b_706 N 0.000
X797_006994 Metarhizium robertsii X797_006994 N 0.000
MBM_00505 Marssonina brunnea MBM_00505 N 0.000
MANI_110599 Metarhizium anisopliae MANI_110599 N 0.000
MAJ_08325 Metarhizium majus MAJ_08325 N 0.000
BBA_05485 Beauveria bassiana BBA_05485 N 0.000
Bcin14g05460 Botrytis cinerea Bcin14g05460 N 0.000
CCM_04546 Cordyceps militaris CCM_04546 N 0.000
Cob_04012 Colletotrichum orbiculare Cob_04012 N 0.000
CPC735_064900 Coccidioides posadasii CPC735_064900 N 0.000
FFUJ_13495 Fusarium fujikuroi FFUJ_13495 N 0.000
FGRRES_06262 Fusarium graminearum FGRRES_06262 N 0.000
FOXG_08011 Fusarium oxysporum FOXG_08011 N 0.000
FPSE_00975 Fusarium pseudograminearum FPSE_00975 N 0.000
FVEG_04932 Fusarium verticillioides FVEG_04932 N 0.000
MAC_06537 Metarhizium acridum MAC_06537 N 0.000
e_gw1.3.1536.1 Nectria haematococca e_gw1.3.1536.1 N 0.000