CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT2G40350
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT2G40350
T000460_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB2C
M00846_2.00
Arabidopsis thaliana
NNRCCGNNN
NNNCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DREB2C
0.703
0.898
DREB2C
M01049_2.00
Arabidopsis thaliana
VRCCGVCW
WGBCGGYB
PBM
Sullivan et al.(2014)
pTH9747
0.703
0.898
DREB2C
M06611_2.00
Arabidopsis thaliana
DCCDCCRCCDHYDCCRCCDCM
KGHGGYGGHRDHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
ERF48_col_a
0.703
0.898
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.681
0.735
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.677
0.776
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G40350.1
AP2
65
116
CDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQ
AT2G40350.2
AP2
72
123
CDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQ
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy