CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ERF13
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT2G44840
T000462_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
(Direct)
(Direct)
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
(Direct)
(Direct)
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.723
0.812
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.723
0.812
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.718
0.792
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.706
0.792
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.706
0.792
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.706
0.792
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.698
0.688
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.685
0.708
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.685
0.708
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01615_2.00
AP2
51
102
QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G44840.1
AP2
91
142
QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
446 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy