CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT3G16280
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT3G16280
T000469_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.MPK6 appears to be associated with the microsomal compartment and may be involved in mediating secretory processes.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
(Direct)
(Direct)
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.739
0.840
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.739
0.840
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.739
0.840
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.729
0.840
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.729
0.840
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.719
0.820
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.719
0.820
Q8LKX0_MAIZE
M09722_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.692
0.820
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.689
0.840
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.689
0.840
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.689
0.840
Q5MAR7_BRANA
M09742_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.682
0.820
Q3HS44_BRANA
M09741_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.682
0.820
Q3HS43_BRANA
M09740_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.682
0.820
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G16280.1
AP2
59
110
PVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGS
AT3G16280.2
AP2
77
128
PVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGS
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
351 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy