CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ERF011
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT3G50260
T000477_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. Involved in defense and freezing stress responses. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
(Direct)
(Direct)
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.823
0.980
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.823
0.980
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.823
0.959
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC
GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.813
0.939
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN
NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.813
0.939
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.813
0.939
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.813
0.939
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.768
0.898
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.768
0.898
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.736
0.878
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.736
0.878
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G50260.1
AP2
20
70
PFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGP
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy