RAP2-9 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT4G06746 T000483_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-9
M06633_2.00		 Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a		 (Direct) (Direct)
RAP2-9
M06634_2.00		 Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.770 0.940
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.769 0.900
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.769 0.900
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.768 0.880
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.768 0.880
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.766 0.940
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.766 0.940
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.766 0.940
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.766 0.940
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.715 0.860
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.715 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G06746.1 AP2 34 85

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.820
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.803
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.803
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.803
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.801
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.800
Ca_02170 Cicer arietinum Ca_02170 I 0.800
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.791
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.790
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.790
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.790
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.790
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.789
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.789
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.783
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.782
MDP0000179962 Malus domestica MDP0000179962 I 0.782
MDP0000125673 Malus domestica MDP0000125673 I 0.782
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.781
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.781
TCM_000669 Theobroma cacao TCM_000669 I 0.781
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.781
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.781
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.781
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.780
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.780
28718.m000038 Ricinus communis 28718.m000038 I 0.780
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.776
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.776
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.775
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.775
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.774
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.774
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.774
MDP0000756341 Malus domestica MDP0000756341 I 0.774
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.772
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.772
30170.m013843 Ricinus communis 30170.m013843 I 0.772
mgf021115m Mimulus guttatus mgf021115m I 0.772
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.772
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.772
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.772
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.772
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.772
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.772
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.771
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.771
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.771
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.771
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.771
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.771
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.771
Cla020961 Citrullus lanatus Cla020961 I 0.771
Bra014056 Brassica rapa Bra014056 I 0.771
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.770
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.770
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.770
Bo4g151460 Brassica oleracea Bo4g151460 I 0.770
Bra017811 Brassica rapa Bra017811 I 0.770
Bra032173 Brassica rapa Bra032173 I 0.770
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.770
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.770
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.770
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.770
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.770
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.770
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.770
Bo7g118430 Brassica oleracea Bo7g118430 I 0.770
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.769
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.769
ERF010 Arabidopsis thaliana AT5G67190 D 0.769
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.769
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.769
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.769
Bra036061 Brassica rapa Bra036061 I 0.769
TCM_033791 Theobroma cacao TCM_033791 I 0.769
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.769
Bo7g063980 Brassica oleracea Bo7g063980 I 0.769
Bra011744 Brassica rapa Bra011744 I 0.769
Bo8g079660 Brassica oleracea Bo8g079660 I 0.769
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.768
ERF011 Arabidopsis thaliana AT3G50260 D 0.768
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.768
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.768
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.768
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.768
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.768
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.768
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.768
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.768
OBART06G04460 Oryza barthii OBART06G04460 I 0.768
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.768
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.768
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.768
OS06G0166400 Oryza sativa OS06G0166400 I 0.768
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.768
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.768
ERF008 Arabidopsis thaliana AT2G23340 D 0.766
Cla014175 Citrullus lanatus Cla014175 I 0.766
mgf006561m Mimulus guttatus mgf006561m I 0.766
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.766
Cla022937 Citrullus lanatus Cla022937 I 0.765
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.765
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.765
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.765
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.764
Bo9g020380 Brassica oleracea Bo9g020380 I 0.763
Bra037124 Brassica rapa Bra037124 I 0.763
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.762
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.760
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.760
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.760
Bra012140 Brassica rapa Bra012140 I 0.760
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.760
Bo1g004940 Brassica oleracea Bo1g004940 I 0.760
PK15612.1 Cannabis sativa PK15612.1 I 0.759
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.759
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.759
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.759
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.759
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.759
mgf000289m Mimulus guttatus mgf000289m I 0.759
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.758
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.758
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.758
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.758
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.758
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.758
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.758
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.758
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.758
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.758
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.758
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.758
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.758
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.758
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.758
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.758
OS04G0648900 Oryza sativa OS04G0648900 I 0.758
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.758
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.755
Cla020550 Citrullus lanatus Cla020550 I 0.753
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.753
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.750
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.748
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.748
mgf025363m Mimulus guttatus mgf025363m I 0.747
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.741
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.738
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.736
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.735
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.734
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.730
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.729
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.727
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.726
Ca_01556 Cicer arietinum Ca_01556 I 0.721
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.721
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.720
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.717
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.715
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.701