CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ERF062
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT4G13620
T000486_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.781
0.860
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.768
0.840
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.768
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G13620.1
AP2
230
281
KLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGE
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
428 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy