DREB1C (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT4G25470 T000492_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
(Direct) (Direct)
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
(Direct) (Direct)
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.800 0.920
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.800 0.920
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.799 0.940
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.799 0.940
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.799 0.940
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.799 0.940
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN

NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.736 0.940
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN

NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.736 0.940
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.715 0.760
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.715 0.760
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.705 0.780
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.703 0.860
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.703 0.860
Q8S2T5_BRANA
M09746_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF5_01
0.696 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01623_2.00 AP2 49 100

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G25470.1 AP2 49 100

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla002362 Citrullus lanatus Cla002362 I 0.815
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.806
Bra028290 Brassica rapa Bra028290 I 0.800
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.800
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.800
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.800
Bo9g104770 Brassica oleracea Bo9g104770 I 0.800
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.800
DREB1D Arabidopsis thaliana AT5G51990 D 0.800
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.800
DREB1A Arabidopsis thaliana AT4G25480 D 0.799
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.798
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.798
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.798
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.798
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.797
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.783
PK23332.1 Cannabis sativa PK23332.1 I 0.783
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.783
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.778
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.778
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.778
mgf026642m Mimulus guttatus mgf026642m I 0.776
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.776
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.775
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.774
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.771
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.770
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.768
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.768
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.768
Cla006315 Citrullus lanatus Cla006315 I 0.768
30147.m014313 Ricinus communis 30147.m014313 I 0.768
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.765
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.764
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.762
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.760
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.759
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.759
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.756
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.754
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.747
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.746
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.746
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.744
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.741
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.740
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.737
DREB1B Arabidopsis thaliana AT4G25490 D 0.736
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.736
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.735
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.733
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.732
Cla011674 Citrullus lanatus Cla011674 I 0.732
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.731
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.729
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.728
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.727
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.725
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.725
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.725
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.723
30190.m011120 Ricinus communis 30190.m011120 I 0.723
mgf017136m Mimulus guttatus mgf017136m I 0.723
TCM_016175 Theobroma cacao TCM_016175 I 0.721
MDP0000154764 Malus domestica MDP0000154764 I 0.720
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.720
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.720
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.720
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.720
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.719
MDP0000198054 Malus domestica MDP0000198054 I 0.719
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.718
Pm023775 Prunus mume Pm023775 I 0.717
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.717
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.717
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.717
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.716
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.716
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.716
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.715
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.715
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.715
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.715
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.715
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.715
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.715
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.715
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.715
DREB1G Oryza indica BGIOSGA008804 I 0.715
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.715
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.715
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.715
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.715
OBART02G27760 Oryza barthii OBART02G27760 I 0.715
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.715
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.715
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.715
DREB1G Oryza sativa OS02G0677300 D 0.715
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.715
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.714
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.714
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.713
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.713
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.710
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.710
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.710
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.709
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.709
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.709
mgf019061m Mimulus guttatus mgf019061m I 0.708
Bra022770 Brassica rapa Bra022770 I 0.706
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.706
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.706
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.705
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.705
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.705
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.705
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.705
OBART04G22220 Oryza barthii OBART04G22220 I 0.705
DREB1E Oryza sativa OS04G0572400 D 0.705
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.705
Si018262m.g Setaria italica Si018262m.g I 0.705
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.705
DREB1E Oryza indica BGIOSGA016950 I 0.705
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.705
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.704
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.704
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.704
Bra019162 Brassica rapa Bra019162 I 0.703
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.703
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.703
Bo7g110320 Brassica oleracea Bo7g110320 I 0.703
mgf026339m Mimulus guttatus mgf026339m I 0.702
Ca_04504 Cicer arietinum Ca_04504 I 0.702
Pm023769 Prunus mume Pm023769 I 0.702
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.702
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.700
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.699
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.698
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.698
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.698
Pm023772 Prunus mume Pm023772 I 0.698
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.698
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.698
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.698
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.698
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.697
60638.m00016 Ricinus communis 60638.m00016 I 0.696
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.696
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.696
Bo3g024240 Brassica oleracea Bo3g024240 I 0.696
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.695
mgf018934m Mimulus guttatus mgf018934m I 0.695
mgf022408m Mimulus guttatus mgf022408m I 0.695
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.695
mgf016974m Mimulus guttatus mgf016974m I 0.695
mgf018631m Mimulus guttatus mgf018631m I 0.695
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.694
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.694
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.693
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.693
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.692
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.691
Pm019386 Prunus mume Pm019386 I 0.691
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.690
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.690
Si011005m.g Setaria italica Si011005m.g I 0.690
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.688
Ca_18948 Cicer arietinum Ca_18948 I 0.688
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.688
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.687
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.687
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.687
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.687
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.686
Bo8g050800 Brassica oleracea Bo8g050800 I 0.685
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.685
Bra010460 Brassica rapa Bra010460 I 0.685
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.684
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.683
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.683
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.683
30190.m011119 Ricinus communis 30190.m011119 I 0.683
AMTR_s00040p00195730 Amborella trichopoda AMTR_s00040p00195730 I 0.682
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.681
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.677
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.677