TF Information

DREB1C *(Arabidopsis thaliana)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	AT4G25470	T000492_2.00	Ensembl (2018-Dec-8)	Link out
NCBI Gene Info: encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DREB1C M01623_2.00	Arabidopsis thaliana	RCCGACAT	ATGTCGGY	PBM Weirauch et al.(2014) pTH8187	(Direct)	(Direct)
DREB1C M06639_2.00	Arabidopsis thaliana	NNNHBRCCGACATNN	NNATGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF2_col_a	(Direct)	(Direct)
DREB1C M06640_2.00	Arabidopsis thaliana	NYBRCCGACATVN	NBATGTCGGYVRN	Dap-seq OMalley et al.(2016) CBF2_colamp_a	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DREB1D M06678_2.00	Arabidopsis thaliana	NHBRCCGACRTNN	NNAYGTCGGYVDN	Dap-seq OMalley et al.(2016) CBF4_col_a	0.800	0.920
DREB1D M06679_2.00	Arabidopsis thaliana	HYRCCGACATND	HNATGTCGGYRD	Dap-seq OMalley et al.(2016) CBF4_colamp_a	0.800	0.920
DREB1A M01624_2.00	Arabidopsis thaliana	NRCCGACNNN	NNNGTCGGYN	PBM Weirauch et al.(2014) pTH8163	0.799	0.940
DREB1A M01625_2.00	Arabidopsis thaliana	NNRCCGACNW	WNGTCGGYNN	PBM Weirauch et al.(2014) pTH9718	0.799	0.940
DREB1A M06641_2.00	Arabidopsis thaliana	HNYBRCCGACDWNN	NNWHGTCGGYVRND	Dap-seq OMalley et al.(2016) CBF3_col_a	0.799	0.940
DREB1A M06642_2.00	Arabidopsis thaliana	YBRCCGACATN	NATGTCGGYVR	Dap-seq OMalley et al.(2016) CBF3_colamp_a	0.799	0.940
DREB1B M06643_2.00	Arabidopsis thaliana	DHBRCCGACRHN	NDYGTCGGYVDH	Dap-seq OMalley et al.(2016) CBF1_col_a	0.736	0.940
DREB1B M06644_2.00	Arabidopsis thaliana	NNNHBRCCGACAWNN	NNWTGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF1_colamp_a	0.736	0.940
DREB1G M01635_2.00	Oryza sativa	NYGCCGACAN	NTGTCGGCRN	PBM Weirauch et al.(2014) pTH8352	0.715	0.760
DREB1G M09707_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1G_01	0.715	0.760
DREB1E M09709_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1E_01	0.705	0.780
Q8S2T3_BRANA M09745_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CBF16_01	0.703	0.860
Q6T3U0_BRANA M09743_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREBII1_01	0.703	0.860
Q8S2T5_BRANA M09746_2.00	Brassica napus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CBF5_01	0.696	0.880
For this family, TFs with SR scores > 0.677* will likely have a similar motif*