SHN3 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT5G25390 T000518_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.729 0.922
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G25390.1 AP2 5 53
AT5G25390.2 AP2 5 56

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action