CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
DREB1D
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT5G51990
T000526_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
(Direct)
(Direct)
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.800
0.920
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.800
0.920
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.800
0.920
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.778
0.940
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.778
0.940
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.778
0.940
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.778
0.940
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.715
0.940
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.715
0.940
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.714
0.800
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.714
0.800
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.701
0.760
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.701
0.760
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.701
0.760
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.701
0.760
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.701
0.760
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.701
0.760
DREB1E
M09709_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.700
0.800
Q8S2T3_BRANA
M09745_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.699
0.880
Q6T3U0_BRANA
M09743_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.699
0.880
Q8S2T5_BRANA
M09746_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF5_01
0.693
0.900
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.678
0.760
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G51990.1
AP2
52
103
PIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGR
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc07g007320.1
Solanum lycopersicum
Solyc07g007320.1
N
0.000
30090.m000247
Ricinus communis
30090.m000247
N
0.000
cassava11490.m1
Manihot esculenta
cassava11490.m1
N
0.000
cassava41034.m1
Manihot esculenta
cassava41034.m1
N
0.000
cassava446.valid.m1
Manihot esculenta
cassava446.valid.m1
N
0.000
Cucsa.048750
Cucumis sativus
Cucsa.048750
N
0.000
Cucsa.132770
Cucumis sativus
Cucsa.132770
N
0.000
Cucsa.134530
Cucumis sativus
Cucsa.134530
N
0.000
Aquca_016_00081
Aquilegia coerulea
Aquca_016_00081
N
0.000
Aquca_030_00325
Aquilegia coerulea
Aquca_030_00325
N
0.000
Bostr.15697s0409
Boechera stricta
Bostr.15697s0409
N
0.000
Carubv10011663m.g
Capsella rubella
Carubv10011663m.g
N
0.000
Ciclev10016385m.g
Citrus clementina
Ciclev10016385m.g
N
0.000
Eucgr.C00450
Eucalyptus grandis
Eucgr.C00450
N
0.000
29417.m000034
Ricinus communis
29417.m000034
N
0.000
Pm027672
Prunus mume
Pm027672
N
0.000
Pm010795
Prunus mume
Pm010795
N
0.000
TCM_006017
Theobroma cacao
TCM_006017
N
0.000
TCM_038233
Theobroma cacao
TCM_038233
N
0.000
Traes_6BS_4DA724E79
Triticum aestivum
Traes_6BS_4DA724E79
N
0.000
Traes_6DS_CA4C01DEF
Triticum aestivum
Traes_6DS_CA4C01DEF
N
0.000
Traes_7AL_5E9E6A334
Triticum aestivum
Traes_7AL_5E9E6A334
N
0.000
Traes_7DL_B446D4CC6
Triticum aestivum
Traes_7DL_B446D4CC6
N
0.000
TRIUR3_32978
Triticum urartu
TRIUR3_32978
N
0.000
TRIUR3_33737
Triticum urartu
TRIUR3_33737
N
0.000
VIT_01s0011g01410
Vitis vinifera
VIT_01s0011g01410
N
0.000
VIT_11s0118g00600
Vitis vinifera
VIT_11s0118g00600
N
0.000
Ca_06740
Cicer arietinum
Ca_06740
N
0.000
Cla010042
Citrullus lanatus
Cla010042
N
0.000
Cla019628
Citrullus lanatus
Cla019628
N
0.000
Eucgr.D00032
Eucalyptus grandis
Eucgr.D00032
N
0.000
Eucgr.E00457
Eucalyptus grandis
Eucgr.E00457
N
0.000
Pavir.Db00476
Panicum virgatum
Pavir.Db00476
N
0.000
Pavir.J35161
Panicum virgatum
Pavir.J35161
N
0.000
SapurV1A.0104s0310
Salix purpurea
SapurV1A.0104s0310
N
0.000
SapurV1A.0210s0200
Salix purpurea
SapurV1A.0210s0200
N
0.000
SapurV1A.0306s0210
Salix purpurea
SapurV1A.0306s0210
N
0.000
SapurV1A.2696s0020
Salix purpurea
SapurV1A.2696s0020
N
0.000
Thhalv10009789m.g
Eutrema salsugineum
Thhalv10009789m.g
N
0.000
Thhalv10022828m.g
Eutrema salsugineum
Thhalv10022828m.g
N
0.000
PK04104.1
Cannabis sativa
PK04104.1
N
0.000
PK19037.1
Cannabis sativa
PK19037.1
N
0.000
chr6.CM0037.1230.nd
Lotus japonicus
chr6.CM0037.1230.nd
N
0.000
LjSGA_033751.1
Lotus japonicus
LjSGA_033751.1
N
0.000
PDK_20s1316692g001
Phoenix dactylifera
PDK_20s1316692g001
N
0.000
Pavir.Da00255
Panicum virgatum
Pavir.Da00255
N
0.000
Pavir.Ab00641
Panicum virgatum
Pavir.Ab00641
N
0.000
Pavir.Ab00578
Panicum virgatum
Pavir.Ab00578
N
0.000
Eucgr.E04309
Eucalyptus grandis
Eucgr.E04309
N
0.000
evm.TU.supercontig_30.133
Carica papaya
evm.TU.supercontig_30.133
N
0.000
evm.TU.supercontig_46.74
Carica papaya
evm.TU.supercontig_46.74
N
0.000
gene19989-v1.0-hybrid
Fragaria vesca
gene19989-v1.0-hybrid
N
0.000
Gorai.009G013500
Gossypium raimondii
Gorai.009G013500
N
0.000
Gorai.010G057300
Gossypium raimondii
Gorai.010G057300
N
0.000
Lus10036226.g
Linum usitatissimum
Lus10036226.g
N
0.000
Lus10038365.g
Linum usitatissimum
Lus10038365.g
N
0.000
MDP0000197021
Malus domestica
MDP0000197021
N
0.000
MDP0000639526
Malus domestica
MDP0000639526
N
0.000
MDP0000891068
Malus domestica
MDP0000891068
N
0.000
orange1.1g048158m.g
Citrus sinensis
orange1.1g048158m.g
N
0.000
Pavir.Aa03378
Panicum virgatum
Pavir.Aa03378
N
0.000
PDK_20s1530701g001
Phoenix dactylifera
PDK_20s1530701g001
N
0.000
Solyc02g068510.1
Solanum lycopersicum
Solyc02g068510.1
N
0.000
AMTR_s00032p00241350
Amborella trichopoda
AMTR_s00032p00241350
N
0.000
GLYMA09G12330
Glycine max
GLYMA09G12330
N
0.000
GLYMA13G23360
Glycine max
GLYMA13G23360
N
0.000
GLYMA15G17040
Glycine max
GLYMA15G17040
N
0.000
GLYMA15G23920
Glycine max
GLYMA15G23920
N
0.000
GLYMA17G11470
Glycine max
GLYMA17G11470
N
0.000
GRMZM2G017882
Zea mays
GRMZM2G017882
N
0.000
GSMUA_Achr1G09990_001
Musa acuminata
GSMUA_Achr1G09990_001
N
0.000
GSMUA_Achr2G02580_001
Musa acuminata
GSMUA_Achr2G02580_001
N
0.000
GSMUA_Achr6G20140_001
Musa acuminata
GSMUA_Achr6G20140_001
N
0.000
GSMUA_Achr7G03600_001
Musa acuminata
GSMUA_Achr7G03600_001
N
0.000
GSMUA_Achr8G33510_001
Musa acuminata
GSMUA_Achr8G33510_001
N
0.000
GSMUA_Achr9G22490_001
Musa acuminata
GSMUA_Achr9G22490_001
N
0.000
GSMUA_Achr9G30790_001
Musa acuminata
GSMUA_Achr9G30790_001
N
0.000
GLYMA09G05781
Glycine max
GLYMA09G05781
N
0.000
GLYMA08G09191
Glycine max
GLYMA08G09191
N
0.000
GLYMA05G26271
Glycine max
GLYMA05G26271
N
0.000
AMTR_s00033p00166000
Amborella trichopoda
AMTR_s00033p00166000
N
0.000
AMTR_s00059p00116150
Amborella trichopoda
AMTR_s00059p00116150
N
0.000
AT1G31040
Arabidopsis thaliana
AT1G31040
N
0.000
BGIOSGA007635
Oryza indica
BGIOSGA007635
N
0.000
BGIOSGA023427
Oryza indica
BGIOSGA023427
N
0.000
Bo2g121040
Brassica oleracea
Bo2g121040
N
0.000
Bo7g041160
Brassica oleracea
Bo7g041160
N
0.000
Bra014899
Brassica rapa
Bra014899
N
0.000
Bra038403
Brassica rapa
Bra038403
N
0.000
BRADI1G32050
Brachypodium distachyon
BRADI1G32050
N
0.000
BRADI3G05380
Brachypodium distachyon
BRADI3G05380
N
0.000
F775_02274
Aegilops tauschii
F775_02274
N
0.000
fgenesh1_pm.C_scaffold_1002523
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002523
N
0.000
GSMUA_AchrUn_randomG23740_001
Musa acuminata
GSMUA_AchrUn_randomG23740_001
N
0.000
LPERR02G04770
Leersia perrieri
LPERR02G04770
N
0.000
OPUNC06G21750
Oryza punctata
OPUNC06G21750
N
0.000
ORGLA06G0201700
Oryza glaberrima
ORGLA06G0201700
N
0.000
ORUFI02G05620
Oryza rufipogon
ORUFI02G05620
N
0.000
OS02G0172800
Oryza sativa
OS02G0172800
N
0.000
OS06G0666100
Oryza sativa
OS06G0666100
N
0.000
POPTR_0001s15920
Populus trichocarpa
POPTR_0001s15920
N
0.000
POPTR_0003s07310
Populus trichocarpa
POPTR_0003s07310
N
0.000
POPTR_0006s05950
Populus trichocarpa
POPTR_0006s05950
N
0.000
POPTR_0018s12380
Populus trichocarpa
POPTR_0018s12380
N
0.000
PRUPE_ppa024886mg
Prunus persica
PRUPE_ppa024886mg
N
0.000
Sb04g004830
Sorghum bicolor
Sb04g004830
N
0.000
Sb10g026620
Sorghum bicolor
Sb10g026620
N
0.000
Si007394m.g
Setaria italica
Si007394m.g
N
0.000
OPUNC02G04680
Oryza punctata
OPUNC02G04680
N
0.000
ONIVA03G43780
Oryza nivara
ONIVA03G43780
N
0.000
ONIVA02G05860
Oryza nivara
ONIVA02G05860
N
0.000
LPERR06G19930
Leersia perrieri
LPERR06G19930
N
0.000
MLOC_21744
Hordeum vulgare
MLOC_21744
N
0.000
MTR_2g036170
Medicago truncatula
MTR_2g036170
N
0.000
MTR_4g094680
Medicago truncatula
MTR_4g094680
N
0.000
MTR_4g116300
Medicago truncatula
MTR_4g116300
N
0.000
OB02G14750
Oryza brachyantha
OB02G14750
N
0.000
OBART02G05520
Oryza barthii
OBART02G05520
N
0.000
OBART06G24000
Oryza barthii
OBART06G24000
N
0.000
OGLUM02G05380
Oryza glumaepatula
OGLUM02G05380
N
0.000
OGLUM06G25260
Oryza glumaepatula
OGLUM06G25260
N
0.000
OLONG_011712
Oryza longistaminata
OLONG_011712
N
0.000
OLONG_022199
Oryza longistaminata
OLONG_022199
N
0.000
OMERI06G23930
Oryza meridionalis
OMERI06G23930
N
0.000
Si018139m.g
Setaria italica
Si018139m.g
N
0.000