BGIOSGA017263 (Oryza indica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 BGIOSGA017263 T000618_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.874 0.856
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.874 0.856
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.856 0.856
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.856 0.856
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.844 0.837
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.844 0.837
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.826 0.846
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.826 0.846
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA017263-PA AP2 143 200
BGIOSGA017263-PA AP2 242 294

Links

Other AP2 family TFs
Other Oryza indica TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I 0.000
fgenesh1_pg.C_scaffold_7002321 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7002321 I 0.000
CAMTA5 Arabidopsis thaliana AT4G16150 D 0.000
BRADI1G27170 Brachypodium distachyon BRADI1G27170 I 0.000
PK20811.1 Cannabis sativa PK20811.1 I 0.000
Cagra.0053s0009 Capsella grandiflora Cagra.0053s0009 I 0.000
Carubv10004090m.g Capsella rubella Carubv10004090m.g I 0.000
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I 0.000
Ca_02997 Cicer arietinum Ca_02997 I 0.000
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I 0.000
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I 0.000
Eucgr.H04035 Eucalyptus grandis Eucgr.H04035 I 0.000
GLYMA17G03510 Glycine max GLYMA17G03510 I 0.000
GLYMA15G15350 Glycine max GLYMA15G15350 I 0.000
GLYMA09G04310 Glycine max GLYMA09G04310 I 0.000
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.000
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I 0.000
chr4.CM0429.140.nd Lotus japonicus chr4.CM0429.140.nd I 0.000
MDP0000233860 Malus domestica MDP0000233860 I 0.000
MDP0000167705 Malus domestica MDP0000167705 I 0.000
MDP0000164873 Malus domestica MDP0000164873 I 0.000
MTR_2g034650 Medicago truncatula MTR_2g034650 I 0.000
MTR_4g121840 Medicago truncatula MTR_4g121840 I 0.000
mgf012030m Mimulus guttatus mgf012030m I 0.000
GSMUA_Achr8G10490_001 Musa acuminata GSMUA_Achr8G10490_001 I 0.000
OB07G20740 Oryza brachyantha OB07G20740 I 0.000
OGLUM07G13800 Oryza glumaepatula OGLUM07G13800 I 0.000
OLONG_014480 Oryza longistaminata OLONG_014480 I 0.000
ONIVA07G13300 Oryza nivara ONIVA07G13300 I 0.000
OPUNC07G13630 Oryza punctata OPUNC07G13630 I 0.000
ORUFI07G15090 Oryza rufipogon ORUFI07G15090 I 0.000
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D 0.000
OS07G0490200 Oryza sativa OS07G0490200 I 0.000
Pavir.Ba00948 Panicum virgatum Pavir.Ba00948 I 0.000
Pavir.J11066 Panicum virgatum Pavir.J11066 I 0.000
PRUPE_ppa001493mg Prunus persica PRUPE_ppa001493mg I 0.000
Sb02g033620 Sorghum bicolor Sb02g033620 I 0.000
TCM_021327 Theobroma cacao TCM_021327 I 0.000
Traes_2AS_4C4190DEB Triticum aestivum Traes_2AS_4C4190DEB I 0.000
Traes_2BS_1A9DB766A Triticum aestivum Traes_2BS_1A9DB766A I 0.000
GRMZM2G032336 Zea mays GRMZM2G032336 I 0.000