Bo01335s010 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo01335s010 T000707_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.852 0.940
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.852 0.940
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.852 0.940
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.852 0.940
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.852 0.940
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.852 0.940
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.774 0.780
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.723 0.780
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.723 0.780
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.723 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.707 0.760
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.707 0.760
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.707 0.760
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.707 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.707 0.760
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.707 0.760
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo01335s010.1 AP2 29 80

Links

Other AP2 family TFs
Other Brassica oleracea TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra016763 Brassica rapa Bra016763 I 0.865
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.852
DREB1F Arabidopsis thaliana AT1G12610 D 0.852
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.845
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.845
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.842
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.841
Bra026963 Brassica rapa Bra026963 I 0.835
Bo8g108050 Brassica oleracea Bo8g108050 I 0.835
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.782
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.779
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.774
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.774
mgf017136m Mimulus guttatus mgf017136m I 0.774
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.774
mgf019061m Mimulus guttatus mgf019061m I 0.774
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.773
Bo5g016750 Brassica oleracea Bo5g016750 I 0.771
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.768
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.761
60638.m00016 Ricinus communis 60638.m00016 I 0.759
Cla011674 Citrullus lanatus Cla011674 I 0.757
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.757
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.756
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.756
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.754
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.754
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.749
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.748
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.748
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.748
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.748
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.748
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.748
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.747
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.746
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.745
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.744
MDP0000154764 Malus domestica MDP0000154764 I 0.742
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.742
Pm023772 Prunus mume Pm023772 I 0.740
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.740
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.740
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.740
30190.m011119 Ricinus communis 30190.m011119 I 0.740
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.739
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.739
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.739
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.739
Pm023775 Prunus mume Pm023775 I 0.738
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.738
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.737
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.737
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.737
mgf026642m Mimulus guttatus mgf026642m I 0.737
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.736
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.736
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.736
Pm023769 Prunus mume Pm023769 I 0.736
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.734
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.732
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.732
Bra027612 Brassica rapa Bra027612 I 0.731
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.731
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.730
PK23332.1 Cannabis sativa PK23332.1 I 0.730
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.729
MDP0000198054 Malus domestica MDP0000198054 I 0.729
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.729
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.727
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.727
Cla006315 Citrullus lanatus Cla006315 I 0.725
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.725
DREB1E Arabidopsis thaliana AT1G63030 D 0.723
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.723
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.720
TCM_016175 Theobroma cacao TCM_016175 I 0.720
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.719
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.718
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.718
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.717
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.717
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.716
30190.m011120 Ricinus communis 30190.m011120 I 0.715
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.714
30147.m014313 Ricinus communis 30147.m014313 I 0.713
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.710
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.709
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.709
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.708
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.708
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.708
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.707
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.707
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.707
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.707
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.707
Bo9g104770 Brassica oleracea Bo9g104770 I 0.707
DREB1D Arabidopsis thaliana AT5G51990 D 0.707
DREB1A Arabidopsis thaliana AT4G25480 D 0.707
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.707
Bra028290 Brassica rapa Bra028290 I 0.707
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.707
Bra019777 Brassica rapa Bra019777 I 0.704
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.703
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.703
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.703
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.703
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.702
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.701
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.701
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.701
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.701
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.701
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.699
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.699
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.699
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.699
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.699
DREB1G Oryza sativa OS02G0677300 D 0.699
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.699
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.699
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.699
DREB1G Oryza indica BGIOSGA008804 I 0.699
OBART02G27760 Oryza barthii OBART02G27760 I 0.699
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.699
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.699
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.698
Cla002362 Citrullus lanatus Cla002362 I 0.698
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.697
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.695
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.695
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.693
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.691
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.691
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.690
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.689
Si018262m.g Setaria italica Si018262m.g I 0.689
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.687
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.687
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.687
mgf026339m Mimulus guttatus mgf026339m I 0.686
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.685
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.685
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.685
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.685
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.684
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.684
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.683
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.680
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.680
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.679
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.679
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.677
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.677
Ca_08732 Cicer arietinum Ca_08732 I 0.677
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.677