Bo2g006960 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo2g006960 T000734_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN

NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.760 0.918
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD

HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.760 0.918
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.693 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g006960.1 AP2 78 129

Links

Other AP2 family TFs
Other Brassica oleracea TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra028759 Brassica rapa Bra028759 I 0.794
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.786
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.786
Bra005852 Brassica rapa Bra005852 I 0.782
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.768
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.767
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.767
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.767
DREB2A Arabidopsis thaliana AT5G05410 D 0.760
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.760
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.757
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.746
Bra034159 Brassica rapa Bra034159 I 0.745
Bra001386 Brassica rapa Bra001386 I 0.738
Bo3g063910 Brassica oleracea Bo3g063910 I 0.737
Bo1g141310 Brassica oleracea Bo1g141310 I 0.735
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.726
Bo5g136930 Brassica oleracea Bo5g136930 I 0.721
Bra029889 Brassica rapa Bra029889 I 0.721
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.720
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.719
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.713
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.706
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.705
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.705
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.704
DREB2B Arabidopsis thaliana AT3G11020 I 0.698
PK07402.1 Cannabis sativa PK07402.1 D 0.693
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.691
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.691
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.691
Cla006713 Citrullus lanatus Cla006713 I 0.690
29820.m001008 Ricinus communis 29820.m001008 I 0.689
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.687
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.686
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.686
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.683
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.682
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.681
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.680