Bo3g024240 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo3g024240 T000774_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.842 1.000
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.705 0.940
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.705 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.696 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.696 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.696 0.880
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.693 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.693 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g024240.1 AP2 48 99

Links

Other AP2 family TFs
Other Brassica oleracea TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.842
Bra022770 Brassica rapa Bra022770 I 0.708
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.705
Bra019162 Brassica rapa Bra019162 I 0.705
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.705
Bo7g110320 Brassica oleracea Bo7g110320 I 0.705
DREB1C Arabidopsis thaliana AT4G25470 D 0.696
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.693
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.693
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.693
Cla002362 Citrullus lanatus Cla002362 I 0.693
Bo9g104770 Brassica oleracea Bo9g104770 I 0.693
DREB1D Arabidopsis thaliana AT5G51990 D 0.693
Bra028290 Brassica rapa Bra028290 I 0.693
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.693
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.693
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.689
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.678