CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g040110
(
Brassica oleracea
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bo3g040110
T000781_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g040110.1
AP2
129
178
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Bo3g040110.1
AP2
221
271
SKYRGVTLHKCGGWEAGMAQLLAKKAYNKAAISSNGREAVTNFELSTYQNE
Links
Other
AP2
family TFs
Other
Brassica oleracea
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_2g093060
Medicago truncatula
MTR_2g093060
I
0.715
GLYMA13G40470
Glycine max
GLYMA13G40470
I
0.703
PGSC0003DMG400025390
Solanum tuberosum
PGSC0003DMG400025390
I
0.701
Solyc09g007260.2
Solanum lycopersicum
Solyc09g007260.2
N
0.701
PGSC0003DMG400027904
Solanum tuberosum
PGSC0003DMG400027904
I
0.701
TCM_022077
Theobroma cacao
TCM_022077
I
0.701
orange1.1g010454m.g
Citrus sinensis
orange1.1g010454m.g
I
0.701
BRADI2G37800
Brachypodium distachyon
BRADI2G37800
I
0.701
GLYMA11G15650
Glycine max
GLYMA11G15650
I
0.701
Thhalv10016626m.g
Eutrema salsugineum
Thhalv10016626m.g
I
0.701
SapurV1A.0209s0320
Salix purpurea
SapurV1A.0209s0320
I
0.700
Aquca_027_00133
Aquilegia coerulea
Aquca_027_00133
I
0.700
Bostr.27991s0069
Boechera stricta
Bostr.27991s0069
N
0.700
MTR_4g061200
Medicago truncatula
MTR_4g061200
I
0.699
Pavir.J23348
Panicum virgatum
Pavir.J23348
I
0.698
Pavir.J11433
Panicum virgatum
Pavir.J11433
I
0.698
TCM_043051
Theobroma cacao
TCM_043051
N
0.698
ORUFI05G01620
Oryza rufipogon
ORUFI05G01620
N
0.698
OLONG_026757
Oryza longistaminata
OLONG_026757
I
0.698
LPERR05G01420
Leersia perrieri
LPERR05G01420
I
0.698
OMERI05G01620
Oryza meridionalis
OMERI05G01620
N
0.698
OGLUM05G01570
Oryza glumaepatula
OGLUM05G01570
N
0.698
ONIVA05G01600
Oryza nivara
ONIVA05G01600
N
0.698
OPUNC05G01480
Oryza punctata
OPUNC05G01480
I
0.698
GLYMA12G07800
Glycine max
GLYMA12G07800
I
0.697
SapurV1A.0247s0170
Salix purpurea
SapurV1A.0247s0170
I
0.696
RAP2.7
Arabidopsis lyrata
fgenesh2_kg.4__825__AT2G28550.1
N
0.692
Cagra.1809s0003
Capsella grandiflora
Cagra.1809s0003
I
0.692
RAP2.7
Arabidopsis thaliana
AT2G28550
D
0.692
Bra000487
Brassica rapa
Bra000487
N
0.691
GRMZM2G700665
Zea mays
GRMZM2G700665
I
0.688
Solyc04g049800.2
Solanum lycopersicum
Solyc04g049800.2
N
0.685
TCM_042000
Theobroma cacao
TCM_042000
I
0.684