CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g063910
(
Brassica oleracea
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bo3g063910
T000783_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.730
0.820
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.730
0.820
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g063910.1
AP2
70
121
CSYRGVRQRVWGKWVAEIREPNRVSRLWLGTFPTAEEAACAYDEAAKVMYGR
Links
Other
AP2
family TFs
Other
Brassica oleracea
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra001386
Brassica rapa
Bra001386
I
0.813
Bra034159
Brassica rapa
Bra034159
I
0.799
Bo1g141310
Brassica oleracea
Bo1g141310
I
0.789
Bo5g136930
Brassica oleracea
Bo5g136930
I
0.758
Bra029889
Brassica rapa
Bra029889
I
0.758
Thhalv10021161m.g
Eutrema salsugineum
Thhalv10021161m.g
I
0.749
Bra005852
Brassica rapa
Bra005852
I
0.743
Bostr.19424s1037
Boechera stricta
Bostr.19424s1037
I
0.742
Carubv10013771m.g
Capsella rubella
Carubv10013771m.g
I
0.737
Bra028759
Brassica rapa
Bra028759
I
0.737
Bo2g006960
Brassica oleracea
Bo2g006960
I
0.737
Cagra.1655s0066
Capsella grandiflora
Cagra.1655s0066
I
0.737
Carubv10001099m.g
Capsella rubella
Carubv10001099m.g
I
0.736
DREB2A
Arabidopsis lyrata
fgenesh2_kg.6__469__AT5G05410.1
I
0.736
Cagra.1504s0045
Capsella grandiflora
Cagra.1504s0045
I
0.736
DREB2A
Arabidopsis thaliana
AT5G05410
D
0.730
Bostr.13129s0423
Boechera stricta
Bostr.13129s0423
I
0.727
DREB2B
Arabidopsis lyrata
fgenesh2_kg.3__1148__AT3G11020.1
I
0.723
Traes_1AL_A9FB6BF52
Triticum aestivum
Traes_1AL_A9FB6BF52
I
0.684
F775_32062
Aegilops tauschii
F775_32062
I
0.684
Traes_1BL_BDF0801D01
Triticum aestivum
Traes_1BL_BDF0801D01
I
0.684
TRIUR3_17409
Triticum urartu
TRIUR3_17409
I
0.684
chr1.LjT01D01.90.nd
Lotus japonicus
chr1.LjT01D01.90.nd
I
0.682
Pavir.Cb01298
Panicum virgatum
Pavir.Cb01298
I
0.679
Pavir.Ca01725
Panicum virgatum
Pavir.Ca01725
I
0.679
evm.TU.supercontig_19.121
Carica papaya
evm.TU.supercontig_19.121
I
0.677
Sb09g016150
Sorghum bicolor
Sb09g016150
I
0.677