Bo3g063910 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo3g063910 T000783_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN

NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.730 0.820
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD

HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.730 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g063910.1 AP2 70 121

Links

Other AP2 family TFs
Other Brassica oleracea TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra001386 Brassica rapa Bra001386 I 0.813
Bra034159 Brassica rapa Bra034159 I 0.799
Bo1g141310 Brassica oleracea Bo1g141310 I 0.789
Bo5g136930 Brassica oleracea Bo5g136930 I 0.758
Bra029889 Brassica rapa Bra029889 I 0.758
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.749
Bra005852 Brassica rapa Bra005852 I 0.743
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.742
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.737
Bra028759 Brassica rapa Bra028759 I 0.737
Bo2g006960 Brassica oleracea Bo2g006960 I 0.737
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.737
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.736
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.736
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.736
DREB2A Arabidopsis thaliana AT5G05410 D 0.730
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.727
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.723
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.684
F775_32062 Aegilops tauschii F775_32062 I 0.684
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.684
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.684
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.682
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.679
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.679
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.677
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.677