Bo3g100470 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo3g100470 T000789_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN

NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.762 0.896
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW

WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.762 0.896
ERF054
M06647_2.00
Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC

GDCGGYGSHDDNNNNNNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_col_a
0.697 0.771
ERF054
M06648_2.00
Arabidopsis thaliana
NNNNHDBCRCCGHCM

KGDCGGYGVHDNNNN
Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a
0.697 0.771
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g100470.1 AP2 80 131

Links

Other AP2 family TFs
Other Brassica oleracea TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.690
ERF054 Arabidopsis thaliana AT4G28140 D 0.697
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.762
Bo00790s010 Brassica oleracea Bo00790s010 I 0.699
Bo1g051230 Brassica oleracea Bo1g051230 I 0.684
Bo7g111910 Brassica oleracea Bo7g111910 I 0.677
Bo8g054130 Brassica oleracea Bo8g054130 I 0.697
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.735
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.697
Bra010383 Brassica rapa Bra010383 I 0.697
Bra024222 Brassica rapa Bra024222 I 0.677
Bra024357 Brassica rapa Bra024357 I 0.793
Bra024358 Brassica rapa Bra024358 I 0.699
Bra026280 Brassica rapa Bra026280 I 0.690
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.735
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.697
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.697
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.735
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.697
mgf012639m Mimulus guttatus mgf012639m I 0.687
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.762
Thhalv10005326m.g Eutrema salsugineum Thhalv10005326m.g I 0.704
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.698
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.684