Bo4g184540 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo4g184540 T000822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.735 0.940
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.735 0.940
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.735 0.940
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.735 0.920
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.735 0.900
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.735 0.900
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.735 0.900
Q3HS42_BRANA
M09739_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII4_01
0.693 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g184540.1 AP2 53 104

Links

Other AP2 family TFs
Other Brassica oleracea TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra017302 Brassica rapa Bra017302 I 0.809
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.745
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.745
Bo7g104770 Brassica oleracea Bo7g104770 I 0.736
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.735
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.735
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.735
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.735
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.735
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.735
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.735
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.735
ERF038 Arabidopsis thaliana AT2G35700 D 0.735
Bo1g053270 Brassica oleracea Bo1g053270 I 0.735
ERF039 Arabidopsis thaliana AT4G16750 D 0.735
Bra005314 Brassica rapa Bra005314 I 0.735
Bo4g036220 Brassica oleracea Bo4g036220 I 0.735
Bra012693 Brassica rapa Bra012693 I 0.735
Bra040092 Brassica rapa Bra040092 I 0.735
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.735
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.732
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.728
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.728
PK25970.1 Cannabis sativa PK25970.1 I 0.726
Bra023026 Brassica rapa Bra023026 I 0.725
Bo3g028500 Brassica oleracea Bo3g028500 I 0.725
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.723
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.718
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.715
Ca_12765 Cicer arietinum Ca_12765 I 0.714
TCM_015930 Theobroma cacao TCM_015930 I 0.713
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.711
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.711
28353.m000054 Ricinus communis 28353.m000054 I 0.711
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.708
Cla005715 Citrullus lanatus Cla005715 I 0.708
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.708
Pm023417 Prunus mume Pm023417 I 0.707
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.707
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.704
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.704
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.704
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.704
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.703
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.703
BRADI5G17630 Brachypodium distachyon BRADI5G17630 N 0.699
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.693
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.687
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.687
POPTR_0003s07700 Populus trichocarpa POPTR_0003s07700 I 0.685