Bo5g016750 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo5g016750 T000833_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.811 0.902
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.774 0.843
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.774 0.843
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.774 0.843
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.774 0.843
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.774 0.843
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.774 0.843
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.745 0.863
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.745 0.863
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.745 0.863
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g016750.1 AP2 29 80

Links

Other AP2 family TFs
Other Brassica oleracea TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.811
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.811
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.811
Bra026963 Brassica rapa Bra026963 I 0.798
Bo8g108050 Brassica oleracea Bo8g108050 I 0.798
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.793
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.793
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.777
DREB1F Arabidopsis thaliana AT1G12610 D 0.774
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.774
Bo01335s010 Brassica oleracea Bo01335s010 I 0.771
Bra016763 Brassica rapa Bra016763 I 0.771
Bra027612 Brassica rapa Bra027612 I 0.768
Bra019777 Brassica rapa Bra019777 I 0.767
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.767
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.767
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.764
DREB1E Arabidopsis thaliana AT1G63030 D 0.745
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.736
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.733
30190.m011119 Ricinus communis 30190.m011119 I 0.733
mgf017136m Mimulus guttatus mgf017136m I 0.727
mgf019061m Mimulus guttatus mgf019061m I 0.727
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.723
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.723
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.712
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.707
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.705
60638.m00016 Ricinus communis 60638.m00016 I 0.705
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.705
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.704
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.703
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.703
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.699
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.699
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.699
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.699
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.699
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.699
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.698
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.697
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.696
Cla011674 Citrullus lanatus Cla011674 I 0.696
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.693
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.692
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.692
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.691
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.691
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.691
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.690
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.690
mgf026642m Mimulus guttatus mgf026642m I 0.690
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.690
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.690
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.690
PK23332.1 Cannabis sativa PK23332.1 I 0.690
MDP0000154764 Malus domestica MDP0000154764 I 0.689
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.689
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.688
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.688
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.687
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.687
Pm023775 Prunus mume Pm023775 I 0.686
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.686
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.684
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.684
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.683
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.682
Cla006315 Citrullus lanatus Cla006315 I 0.682
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.680
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.678
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.678
Pm023769 Prunus mume Pm023769 I 0.678
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.678
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.678
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.677