Bo6g046850 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g046850 T000859_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.697 0.760
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.697 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g046850.1 AP2 18 69

Links

Other AP2 family TFs
Other Brassica oleracea TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra028009 Brassica rapa Bra028009 I 0.814
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.801
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.794
Bo8g027240 Brassica oleracea Bo8g027240 I 0.788
ERF022 Arabidopsis thaliana AT1G33760 I 0.782
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.778
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.771
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.761
Bra010210 Brassica rapa Bra010210 I 0.759
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.752
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.749
TCM_036269 Theobroma cacao TCM_036269 I 0.746
Bo5g086680 Brassica oleracea Bo5g086680 I 0.744
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.744
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.744
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.743
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.738
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.736
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.736
28118.m000034 Ricinus communis 28118.m000034 I 0.734
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.734
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.734
Cla012665 Citrullus lanatus Cla012665 I 0.733
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.731
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.729
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.728
TCM_036270 Theobroma cacao TCM_036270 I 0.728
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.728
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.728
Pm004269 Prunus mume Pm004269 I 0.728
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.728
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.727
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.727
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.727
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.727
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.727
Pm004272 Prunus mume Pm004272 I 0.727
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.726
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.724
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.724
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.722
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.720
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.720
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.719
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.719
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.718
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.718
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.718
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.718
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.718
MDP0000122740 Malus domestica MDP0000122740 I 0.715
MDP0000151428 Malus domestica MDP0000151428 I 0.715
MDP0000122739 Malus domestica MDP0000122739 I 0.715
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.715
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.714
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.714
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.713
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.713
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.713
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.713
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.712
MDP0000283350 Malus domestica MDP0000283350 I 0.709
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.709
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.708
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.706
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.703
Cla012661 Citrullus lanatus Cla012661 I 0.703
Bra007975 Brassica rapa Bra007975 I 0.701
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.700
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.697
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.697
Bo2g072910 Brassica oleracea Bo2g072910 I 0.697
27805.m000021 Ricinus communis 27805.m000021 I 0.697
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.697
ERF021 Arabidopsis thaliana AT1G71450 D 0.697
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.697
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.695
Si026882m.g Setaria italica Si026882m.g I 0.694
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.693
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.693
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.690
OB11G16300 Oryza brachyantha OB11G16300 I 0.689
Bra016136 Brassica rapa Bra016136 I 0.687
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.686
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.685
Ca_15064 Cicer arietinum Ca_15064 I 0.685
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.684
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.684
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.684
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.684
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.684
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.684
OS11G0242300 Oryza sativa OS11G0242300 I 0.684
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.684
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.684
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.684
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.684
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.684
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.681
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.681
Bo6g113020 Brassica oleracea Bo6g113020 I 0.680
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.679
F775_17299 Aegilops tauschii F775_17299 I 0.679
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.679
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.679
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.679
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.679
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.678