Bo6g068410 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g068410 T000861_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.846 0.959
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.832 0.918
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g068410.1 AP2 115 165

Links

Other AP2 family TFs
Other Brassica oleracea TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.849
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.846
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.846
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.846
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.846
Bra007123 Brassica rapa Bra007123 I 0.846
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.846
Bo8g087280 Brassica oleracea Bo8g087280 I 0.846
SMZ Arabidopsis thaliana AT3G54990 D 0.846
Cla020387 Citrullus lanatus Cla020387 I 0.839
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.839
PK16652.1 Cannabis sativa PK16652.1 I 0.839
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.839
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.839
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.839
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.839
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.837
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.836
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.836
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.833
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.833
Bra002510 Brassica rapa Bra002510 I 0.832
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.832
Bo9g141100 Brassica oleracea Bo9g141100 I 0.832
TOE2 Arabidopsis thaliana AT5G60120 D 0.832
Bra020262 Brassica rapa Bra020262 I 0.832
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.832
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.832
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.832
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.820
SNZ Arabidopsis thaliana AT2G39250 I 0.819
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.819
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.819
MDP0000285955 Malus domestica MDP0000285955 I 0.805
MDP0000281079 Malus domestica MDP0000281079 I 0.805
Pm018608 Prunus mume Pm018608 I 0.805
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.805
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.804
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.804
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.802
Ca_26761 Cicer arietinum Ca_26761 I 0.788