Bo6g068410 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g068410 T000861_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC

GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.846 0.959
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN

NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.832 0.918
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g068410.1 AP2 115 165

Links

Other AP2 family TFs
Other Brassica oleracea TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SMZ Arabidopsis thaliana AT3G54990 D 0.846
TOE2 Arabidopsis thaliana AT5G60120 D 0.832
PK16652.1 Cannabis sativa PK16652.1 I 0.839
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.804
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.846
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.846
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.832
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.804
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.832
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.819
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.832
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.849
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.802
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.839
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.839
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.837
MDP0000281079 Malus domestica MDP0000281079 I 0.805
MDP0000285955 Malus domestica MDP0000285955 I 0.805
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.846
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.832
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.846
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.839
Pm018608 Prunus mume Pm018608 I 0.805
Bo8g087280 Brassica oleracea Bo8g087280 I 0.846
Bo9g141100 Brassica oleracea Bo9g141100 I 0.832
Bra002510 Brassica rapa Bra002510 I 0.832
Bra007123 Brassica rapa Bra007123 I 0.846
Bra020262 Brassica rapa Bra020262 I 0.832
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.819
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.846
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.833
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.833
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.839
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.820
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.836
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.839
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.805
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.836
Ca_26761 Cicer arietinum Ca_26761 I 0.788
Cla020387 Citrullus lanatus Cla020387 I 0.839
SNZ Arabidopsis thaliana AT2G39250 I 0.819