Bo6g094210 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g094210 T000870_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.798 0.960
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.798 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g094210.1 AP2 22 73

Links

Other AP2 family TFs
Other Brassica oleracea TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra003924 Brassica rapa Bra003924 I 0.838
ERF021 Arabidopsis thaliana AT1G71450 D 0.798
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.798
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.798
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.798
Bo2g072910 Brassica oleracea Bo2g072910 I 0.798
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.788
Bra016136 Brassica rapa Bra016136 I 0.786
Bra007975 Brassica rapa Bra007975 I 0.783
Bo6g113020 Brassica oleracea Bo6g113020 I 0.783
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.760
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.760
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.760
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.760
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.754
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.754
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.753
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.753
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.752
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.751
Pm004269 Prunus mume Pm004269 I 0.751
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.748
MDP0000283350 Malus domestica MDP0000283350 I 0.748
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.747
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.747
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.747
Cla012665 Citrullus lanatus Cla012665 I 0.746
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.742
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.739
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.738
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.736
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.733
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.732
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.729
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.728
28118.m000034 Ricinus communis 28118.m000034 I 0.724
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.719
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.719
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.716
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.716
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.714
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.713
TCM_036269 Theobroma cacao TCM_036269 I 0.713
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.712
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.711
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.706
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.705
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.701
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.699
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.697
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.697
TCM_036270 Theobroma cacao TCM_036270 I 0.696
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.693
Bra010210 Brassica rapa Bra010210 I 0.684
Bo8g027240 Brassica oleracea Bo8g027240 I 0.682
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.681
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.680
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.680
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.678
Bo5g086680 Brassica oleracea Bo5g086680 I 0.678
ERF022 Arabidopsis thaliana AT1G33760 I 0.677
Pm004272 Prunus mume Pm004272 I 0.677
27805.m000021 Ricinus communis 27805.m000021 I 0.677