Bo7g111910 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo7g111910 T000911_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.811 0.980
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.811 0.980
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.682 0.740
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.682 0.740
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.680 0.840
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.680 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g111910.1 AP2 108 159

Links

Other AP2 family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra024222 Brassica rapa Bra024222 I 0.828
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.811
Bo8g054130 Brassica oleracea Bo8g054130 I 0.811
Bra010383 Brassica rapa Bra010383 I 0.811
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.811
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.811
ERF054 Arabidopsis thaliana AT4G28140 D 0.811
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.811
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.802
Bra026280 Brassica rapa Bra026280 I 0.795
Bo1g051230 Brassica oleracea Bo1g051230 I 0.782
Bo8g102130 Brassica oleracea Bo8g102130 I 0.727
ERF053 Arabidopsis thaliana AT2G20880 I 0.727
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.727
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.719
Bra031146 Brassica rapa Bra031146 I 0.719
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.708
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.704
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.691
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.691
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.691
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.682
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.682
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.681
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.680
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.680
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.680
Bra040381 Brassica rapa Bra040381 I 0.680
Bo5g069450 Brassica oleracea Bo5g069450 I 0.680
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.680
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.680
ERF055 Arabidopsis thaliana AT1G36060 D 0.680
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.680
TCM_020321 Theobroma cacao TCM_020321 I 0.679
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.678
Bo3g100470 Brassica oleracea Bo3g100470 I 0.677