Bo8g027240 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo8g027240 T000919_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.722 0.800
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.722 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g027240.1 AP2 18 69

Links

Other AP2 family TFs
Other Brassica oleracea TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.816
ERF022 Arabidopsis thaliana AT1G33760 I 0.816
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.805
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.794
Bra028009 Brassica rapa Bra028009 I 0.794
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.793
Bo6g046850 Brassica oleracea Bo6g046850 I 0.788
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.781
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.781
Bra010210 Brassica rapa Bra010210 I 0.778
TCM_036269 Theobroma cacao TCM_036269 I 0.778
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.775
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.773
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.769
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.768
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.768
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.766
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.766
Bo5g086680 Brassica oleracea Bo5g086680 I 0.763
Pm004272 Prunus mume Pm004272 I 0.761
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.761
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.760
Pm004269 Prunus mume Pm004269 I 0.760
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.760
TCM_036270 Theobroma cacao TCM_036270 I 0.760
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.760
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.759
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.759
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.759
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.759
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.759
Cla012665 Citrullus lanatus Cla012665 I 0.758
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.756
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.756
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.754
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.753
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.753
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.753
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.752
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.752
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.751
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.750
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.750
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.750
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.750
MDP0000151428 Malus domestica MDP0000151428 I 0.749
MDP0000122740 Malus domestica MDP0000122740 I 0.749
MDP0000122739 Malus domestica MDP0000122739 I 0.749
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.747
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.747
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.745
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.745
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.745
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.745
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.743
MDP0000283350 Malus domestica MDP0000283350 I 0.741
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.741
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.740
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.740
28118.m000034 Ricinus communis 28118.m000034 I 0.739
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.738
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.735
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.735
Cla012661 Citrullus lanatus Cla012661 I 0.735
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.732
27805.m000021 Ricinus communis 27805.m000021 I 0.729
Si026882m.g Setaria italica Si026882m.g I 0.726
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.724
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.722
Bra007975 Brassica rapa Bra007975 I 0.722
Bo2g072910 Brassica oleracea Bo2g072910 I 0.722
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.722
ERF021 Arabidopsis thaliana AT1G71450 D 0.722
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.722
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.720
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.720
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.719
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.719
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.717
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.715
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.713
Bra016136 Brassica rapa Bra016136 I 0.713
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.713
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.711
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.708
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.708
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.707
OB11G16300 Oryza brachyantha OB11G16300 I 0.706
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.706
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.706
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.706
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.706
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.706
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.706
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.706
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.706
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.706
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.706
OS11G0242300 Oryza sativa OS11G0242300 I 0.706
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.706
Bo6g113020 Brassica oleracea Bo6g113020 I 0.705
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.701
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.701
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.701
F775_17299 Aegilops tauschii F775_17299 I 0.701
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.701
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.701
Ca_15064 Cicer arietinum Ca_15064 I 0.700
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.700
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.695
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.695
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.695
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.695
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.695
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.692
Bo6g094210 Brassica oleracea Bo6g094210 I 0.682
Bra003924 Brassica rapa Bra003924 I 0.682
BRADI3G45997 Brachypodium distachyon BRADI3G45997 N 0.681
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.680
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.677
OPUNC02G18630 Oryza punctata OPUNC02G18630 N 0.677