CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo8g050740
(
Brassica oleracea
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bo8g050740
T000923_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8W242_BRANA
M09747_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF_01
0.802
1.000
Q8S2T2_BRANA
M09744_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF17_01
0.802
1.000
A6N8P3_BRANA
M09738_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBI5_01
0.802
1.000
Q8S2T3_BRANA
M09745_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.707
0.900
Q6T3U0_BRANA
M09743_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.707
0.900
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g050740.1
AP2
47
98
PIYRGVRLRKSGKWVCEVREPNKKSRIWLGTFKTAEIAARAHDVAALALRGR
Links
Other
AP2
family TFs
Other
Brassica oleracea
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra010461
Brassica rapa
Bra010461
I
0.802
A6N8P3_BRANA
Brassica napus
A6N8P3_BRANA
D
0.802
Q8S2T2_BRANA
Brassica napus
Q8S2T2_BRANA
D
0.802
Q8W242_BRANA
Brassica napus
Q8W242_BRANA
D
0.802
Bra010460
Brassica rapa
Bra010460
I
0.769
Bo8g050800
Brassica oleracea
Bo8g050800
I
0.769
Bra022770
Brassica rapa
Bra022770
I
0.710
Bra019162
Brassica rapa
Bra019162
I
0.707
Q8S2T3_BRANA
Brassica napus
Q8S2T3_BRANA
D
0.707
Bo7g110320
Brassica oleracea
Bo7g110320
I
0.707
Q6T3U0_BRANA
Brassica napus
Q6T3U0_BRANA
D
0.707
Cucsa.166340
Cucumis sativus
Cucsa.166340
I
0.677