Bo8g050800 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo8g050800 T000924_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8W242_BRANA
M09747_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF_01 		0.769 0.980
Q8S2T2_BRANA
M09744_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF17_01 		0.769 0.980
A6N8P3_BRANA
M09738_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBI5_01 		0.769 0.980
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.692 0.920
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.692 0.920
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.692 0.920
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.692 0.920
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.691 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.691 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.685 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.685 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.685 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g050800.1 AP2 51 102

Links

Other AP2 family TFs
Other Brassica oleracea TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra010460 Brassica rapa Bra010460 I 0.813
Bra010461 Brassica rapa Bra010461 I 0.769
Q8W242_BRANA Brassica napus Q8W242_BRANA D 0.769
Q8S2T2_BRANA Brassica napus Q8S2T2_BRANA D 0.769
Bo8g050740 Brassica oleracea Bo8g050740 I 0.769
A6N8P3_BRANA Brassica napus A6N8P3_BRANA D 0.769
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.721
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.719
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.719
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.719
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.719
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.715
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.714
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.714
mgf016974m Mimulus guttatus mgf016974m I 0.713
mgf022408m Mimulus guttatus mgf022408m I 0.713
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.713
mgf018934m Mimulus guttatus mgf018934m I 0.713
mgf018631m Mimulus guttatus mgf018631m I 0.713
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.711
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.709
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.709
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.708
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.704
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.695
DREB1A Arabidopsis thaliana AT4G25480 D 0.692
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.691
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.691
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.691
Bra028290 Brassica rapa Bra028290 I 0.691
DREB1D Arabidopsis thaliana AT5G51990 D 0.691
Bo9g104770 Brassica oleracea Bo9g104770 I 0.691
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.691
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.691
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.691
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.691
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.691
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.691
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.688
30147.m014313 Ricinus communis 30147.m014313 I 0.688
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.688
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.688
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.688
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.688
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.685
DREB1C Arabidopsis thaliana AT4G25470 D 0.685
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.685
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.684
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.684
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.683
mgf026642m Mimulus guttatus mgf026642m I 0.682
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.682
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.681
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
Cla002362 Citrullus lanatus Cla002362 I 0.678
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.678
Aquca_028_00229 Aquilegia coerulea Aquca_028_00229 N 0.677
Bra022770 Brassica rapa Bra022770 I 0.677