Bo9g020380 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo9g020380 T000955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.819 0.980
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.819 0.980
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.818 0.940
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.817 0.940
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.817 0.940
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.808 0.920
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.808 0.920
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.808 0.920
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.808 0.920
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.763 0.880
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.763 0.880
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.730 0.860
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.730 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g020380.1 AP2 20 71

Links

Other AP2 family TFs
Other Brassica oleracea TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28718.m000038 Ricinus communis 28718.m000038 I 0.803
30170.m013843 Ricinus communis 30170.m013843 I 0.794
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.691
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.796
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.794
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.756
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.756
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.757
Bo1g004940 Brassica oleracea Bo1g004940 I 0.808
Bo4g151460 Brassica oleracea Bo4g151460 I 0.818
Bo7g063980 Brassica oleracea Bo7g063980 I 0.819
Bo7g118430 Brassica oleracea Bo7g118430 I 0.818
Bo8g079660 Brassica oleracea Bo8g079660 I 0.819
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.819
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.775
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.818
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.726
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.781
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.818
Bra011744 Brassica rapa Bra011744 I 0.783
Bra012140 Brassica rapa Bra012140 I 0.798
Bra014056 Brassica rapa Bra014056 I 0.786
Bra017811 Brassica rapa Bra017811 I 0.818
Bra032173 Brassica rapa Bra032173 I 0.818
Bra036061 Brassica rapa Bra036061 I 0.819
Bra037124 Brassica rapa Bra037124 I 0.827
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.757
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.756
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.819
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.817
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.775
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.818
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.818
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.818
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.775
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.817
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.818
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.819
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.780
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.794
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.794
Ca_01556 Cicer arietinum Ca_01556 I 0.733
Ca_02170 Cicer arietinum Ca_02170 I 0.775
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.817
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.792
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.805
Cla014175 Citrullus lanatus Cla014175 I 0.759
Cla020550 Citrullus lanatus Cla020550 I 0.741
Cla020961 Citrullus lanatus Cla020961 I 0.786
Cla022937 Citrullus lanatus Cla022937 I 0.784
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.759
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.786
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.741
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.784
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.819
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.818
ERF008 Arabidopsis thaliana AT2G23340 D 0.808
ERF010 Arabidopsis thaliana AT5G67190 D 0.819
ERF011 Arabidopsis thaliana AT3G50260 D 0.817
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.784
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.786
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.786
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.805
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.794
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.804
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.777
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.774
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.774
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.774
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.777
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.786
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.762
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.786
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.805
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.773
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.805
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.786
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.773
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.725
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.756
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.748
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.756
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.784
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.766
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.760
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.728
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.725
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.742
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.727
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.778
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.772
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.777
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.735
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.764
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.756
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.757
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.751
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.796
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.794
MDP0000125673 Malus domestica MDP0000125673 I 0.804
MDP0000179962 Malus domestica MDP0000179962 I 0.804
MDP0000756341 Malus domestica MDP0000756341 I 0.761
mgf000289m Mimulus guttatus mgf000289m I 0.781
mgf006561m Mimulus guttatus mgf006561m I 0.802
mgf021115m Mimulus guttatus mgf021115m I 0.794
mgf025363m Mimulus guttatus mgf025363m I 0.769
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.755
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.774
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.733
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.775
OBART06G04460 Oryza barthii OBART06G04460 I 0.757
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.756
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.757
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.756
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.756
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.757
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.757
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.805
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.792
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.756
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.757
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.757
OS04G0648900 Oryza sativa OS04G0648900 I 0.756
OS06G0166400 Oryza sativa OS06G0166400 I 0.757
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.756
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.757
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.756
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.757
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.795
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.781
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.760
PK15612.1 Cannabis sativa PK15612.1 I 0.777
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.794
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.780
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.780
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.794
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.761
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.802
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.730
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.818
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.763
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.732
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.818
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.763
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.796
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.794
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.780
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.765
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.765
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.794
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.756
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.757
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.781
TCM_000669 Theobroma cacao TCM_000669 I 0.805
TCM_033791 Theobroma cacao TCM_033791 I 0.784
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.776
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.819
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.818
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.756
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.755
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.763
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.770