Bo9g028820 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo9g028820 T000956_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.725 0.959
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.688 0.857
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.688 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g028820.1 AP2 15 65

Links

Other AP2 family TFs
Other Brassica oleracea TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra027615 Brassica rapa Bra027615 I 0.742
Bra027616 Brassica rapa Bra027616 I 0.742
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.732
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.732
TCM_016176 Theobroma cacao TCM_016176 I 0.728
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.728
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.728
30147.m014311 Ricinus communis 30147.m014311 I 0.727
Bo9g036590 Brassica oleracea Bo9g036590 I 0.727
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.725
Cla011673 Citrullus lanatus Cla011673 I 0.723
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.718
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.714
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.714
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.713
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.710
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.710
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.709
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.709
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.705
Cla004491 Citrullus lanatus Cla004491 I 0.705
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.702
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.693
ERF027 Arabidopsis thaliana AT1G12630 D 0.688
MDP0000189347 Malus domestica MDP0000189347 I 0.688
30190.m011121 Ricinus communis 30190.m011121 N 0.680
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.678
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.677
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.677
OBART02G27750 Oryza barthii OBART02G27750 I 0.677
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.677
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.677
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.677
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.677
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.677
OS02G0676800 Oryza sativa OS02G0676800 I 0.677
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.677
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.677
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.677
Si018039m.g Setaria italica Si018039m.g I 0.677