Bo9g175390 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo9g175390 T000978_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR

YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.839 0.980
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY

RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.839 0.980
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH

DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.784 0.840
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN

NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.784 0.840
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD

HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.784 0.840
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY

RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.784 0.840
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.780 0.920
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.725 0.820
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.725 0.820
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.725 0.820
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.706 0.780
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.698 0.760
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.697 0.780
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.695 0.720
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.692 0.720
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.688 0.780
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.688 0.780
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.688 0.740
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.688 0.740
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.688 0.740
ABR1
M01051_2.00
Arabidopsis thaliana
NYGSCGSCVNN

NNBGSCGSCRN
PBM
Sullivan et al.(2014)
pTH7383
0.682 0.760
ABR1
M06684_2.00
Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH

DDNDRNDDHKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ABR1_col_a
0.682 0.760
ABR1
M06685_2.00
Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN

NNNNNDWTKGCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ABR1_colamp_a
0.682 0.760
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.682 0.740
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.681 0.780
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.681 0.780
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.681 0.780
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD

HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.677 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g175390.1 AP2 82 133

Links

Other AP2 family TFs
Other Brassica oleracea TFs

638 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLIS3 Homo sapiens ENSG00000107249 D 0.000
glis3 Xenopus tropicalis XB-GENE-984727 I 0.000
SPU_018744 Strongylocentrotus purpuratus SPU_018744 I 0.000
ENSXMAG00000013077 Xiphophorus maculatus ENSXMAG00000013077 I 0.000
GLIS3 Vicugna pacos ENSVPAG00000005473 I 0.000
ENSTSYG00000000686 Tarsius syrichta ENSTSYG00000000686 I 0.000
ENSTRUG00000001198 Takifugu rubripes ENSTRUG00000001198 I 0.000
GLIS1 Tetraodon nigroviridis ENSTNIG00000010694 I 0.000
GLIS1 Taeniopygia guttata ENSTGUG00000009294 I 0.000
GLIS3 Taeniopygia guttata ENSTGUG00000005266 I 0.000
ENSSTOG00000000302 Ictidomys tridecemlineatus ENSSTOG00000000302 I 0.000
Glis3 Rattus norvegicus ENSRNOG00000014768 I 0.000
GLIS3 Pteropus vampyrus ENSPVAG00000001839 I 0.000
ENSPSIG00000005966 Pelodiscus sinensis ENSPSIG00000005966 I 0.000
ENSPSIG00000002846 Pelodiscus sinensis ENSPSIG00000002846 I 0.000
ENSPPYG00000019250 Pongo abelii ENSPPYG00000019250 I 0.000
Aan_R004053 Calypte anna Aan_R004053 I 0.000
Aan_R004381 Calypte anna Aan_R004381 I 0.000
Sakowv30037345m.g Saccoglossus kowalevskii Sakowv30037345m.g I 0.000
Ocbimv22014778m.g Octopus bimaculoides Ocbimv22014778m.g I 0.000
gw.28.157.1 Branchiostoma floridae gw.28.157.1 I 0.000
e_gw.471.22.1 Branchiostoma floridae e_gw.471.22.1 I 0.000
Pvit_11533 Pogona vitticeps Pvit_11533 I 0.000
Pvit_10484 Pogona vitticeps Pvit_10484 I 0.000
Ogr17806 Ophisaurus gracilis Ogr17806 I 0.000
Myotis_brandtii_GLIS3_10023567 Myotis brandtii Myotis_brandtii_GLIS3_10023567 I 0.000
Gfo_R010168 Geospiza fortis Gfo_R010168 I 0.000
ENSP00000384734-D2 Bos grunniens ENSP00000384734-D2 I 0.000
ENSP00000371398 Macaca fascicularis ENSP00000371398 I 0.000
Brh_R013214 Buceros rhinoceros Brh_R013214 I 0.000
Afo_R016063 Aptenodytes forsteri Afo_R016063 I 0.000
Afo_R001041 Aptenodytes forsteri Afo_R001041 I 0.000
ENSPFOG00000017914 Poecilia formosa ENSPFOG00000017914 I 0.000
GLIS3 Procavia capensis ENSPCAG00000004139 I 0.000
ENSPANG00000025157 Papio anubis ENSPANG00000025157 I 0.000
GLIS3 Gallus gallus ENSGALG00000010180 I 0.000
GLIS1 Gasterosteus aculeatus ENSGACG00000012109 I 0.000
ENSFALG00000011974 Ficedula albicollis ENSFALG00000011974 I 0.000
GLIS3 Echinops telfairi ENSETEG00000015977 I 0.000
GLIS3 Equus caballus ENSECAG00000020544 I 0.000
glis1b Danio rerio ENSDARG00000027933 I 0.000
GLIS1 Cavia porcellus ENSCPOG00000009497 I 0.000
GLIS3 Cavia porcellus ENSCPOG00000005523 I 0.000
GLIS3 Callithrix jacchus ENSCJAG00000011083 I 0.000
GLIS3 Canis familiaris ENSCAFG00000031499 I 0.000
ENSAPLG00000014844 Anas platyrhynchos ENSAPLG00000014844 I 0.000
ENSAPLG00000013972 Anas platyrhynchos ENSAPLG00000013972 I 0.000
ENSAMXG00000005278 Astyanax mexicanus ENSAMXG00000005278 I 0.000
GLIS3 Anolis carolinensis ENSACAG00000003374 I 0.000
ENSGMOG00000018511 Gadus morhua ENSGMOG00000018511 I 0.000
ENSLACG00000012147 Latimeria chalumnae ENSLACG00000012147 I 0.000
ENSGALG00000010721 Gallus gallus ENSGALG00000010721 I 0.000
ENSORLG00000003872 Oryzias latipes ENSORLG00000003872 I 0.000
GLIS3 Otolemur garnettii ENSOGAG00000007376 I 0.000
ENSOARG00000013378 Ovis aries ENSOARG00000013378 I 0.000
ENSOANG00000014997 Ornithorhynchus anatinus ENSOANG00000014997 I 0.000
ENSNLEG00000008824 Nomascus leucogenys ENSNLEG00000008824 I 0.000
Glis3 Mus musculus ENSMUSG00000052942 I 0.000
ENSMPUG00000005095 Mustela putorius furo ENSMPUG00000005095 I 0.000
GLIS3 Monodelphis domestica ENSMODG00000015403 I 0.000
GLIS1 Meleagris gallopavo ENSMGAG00000011303 I 0.000
ENSMEUG00000009882 Macropus eugenii ENSMEUG00000009882 I 0.000
ENSMEUG00000005102 Macropus eugenii ENSMEUG00000005102 I 0.000
ENSLOCG00000012972 Lepisosteus oculatus ENSLOCG00000012972 I 0.000
ENSLOCG00000003071 Lepisosteus oculatus ENSLOCG00000003071 I 0.000
ENSTNIG00000009052 Tetraodon nigroviridis ENSTNIG00000009052 N 0.000
CapteG111854 Capitella teleta CapteG111854 N 0.000
LotgiG55425 Lottia gigantea LotgiG55425 N 0.000