Bra006460 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra006460 T001023_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.744 0.939
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.690 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.690 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.690 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006460.1-P AP2 31 82

Links

Other AP2 family TFs
Other Brassica rapa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g013160 Brassica oleracea Bo3g013160 I 0.806
Bra002159 Brassica rapa Bra002159 I 0.744
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.744
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.744
Bo9g155940 Brassica oleracea Bo9g155940 I 0.744
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.744
DREB2G Arabidopsis thaliana AT5G18450 D 0.744
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.736
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.736
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.731
Bo2g016490 Brassica oleracea Bo2g016490 I 0.724
Bra023674 Brassica rapa Bra023674 I 0.724
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.717
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.717
29680.m001737 Ricinus communis 29680.m001737 I 0.713
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.713
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.713
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.711
Pm003634 Prunus mume Pm003634 I 0.707
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.704
mgf017629m Mimulus guttatus mgf017629m I 0.700
Cucsa.130200 Cucumis sativus Cucsa.130200 I 0.695
TCM_026121 Theobroma cacao TCM_026121 I 0.695
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.693
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.692
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.692
30170.m014115 Ricinus communis 30170.m014115 I 0.692
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.692
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.691
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.691
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.691
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.690
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.690
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.690
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.690
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.690
Bra015840 Brassica rapa Bra015840 I 0.690
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.690
Bo6g119660 Brassica oleracea Bo6g119660 I 0.690
DREB2D Arabidopsis thaliana AT1G75490 D 0.690
mgf024545m Mimulus guttatus mgf024545m I 0.689
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.688
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.688
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.688
Bo6g086320 Brassica oleracea Bo6g086320 I 0.687
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.687
Bra003752 Brassica rapa Bra003752 I 0.687
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.686
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.684
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.684
MDP0000250924 Malus domestica MDP0000250924 I 0.684
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.684
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.683
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.683
Cla012194 Citrullus lanatus Cla012194 I 0.682
Bo2g083920 Brassica oleracea Bo2g083920 I 0.682
Bra008200 Brassica rapa Bra008200 I 0.682
Cla021113 Citrullus lanatus Cla021113 I 0.680
Pm006274 Prunus mume Pm006274 I 0.680
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.680
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
MDP0000295902 Malus domestica MDP0000295902 I 0.678
MDP0000141335 Malus domestica MDP0000141335 I 0.678
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.678
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.678
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.678
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.677
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.677
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.677
Ca_10770 Cicer arietinum Ca_10770 I 0.677
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.677