Bra007123 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra007123 T001028_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC

GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.869 1.000
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN

NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.855 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007123.1-P AP2 117 167

Links

Other AP2 family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.688
SNZ Arabidopsis thaliana AT2G39250 I 0.801
SMZ Arabidopsis thaliana AT3G54990 D 0.869
TOE2 Arabidopsis thaliana AT5G60120 D 0.855
Bo6g068410 Brassica oleracea Bo6g068410 I 0.846
Bo8g087280 Brassica oleracea Bo8g087280 I 0.869
Bo9g141100 Brassica oleracea Bo9g141100 I 0.855
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.869
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.801
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.855
Bra002510 Brassica rapa Bra002510 I 0.855
Bra020262 Brassica rapa Bra020262 I 0.855
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.808
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.855
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.869
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.869
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.808
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.855
Ca_26761 Cicer arietinum Ca_26761 I 0.804
Cla020387 Citrullus lanatus Cla020387 I 0.854
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.854
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.864
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.801
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.869
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.817
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.848
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.848
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.854
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.854
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.854
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.853
MDP0000281079 Malus domestica MDP0000281079 I 0.812
MDP0000285955 Malus domestica MDP0000285955 I 0.812
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.836
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.858
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.854
PK16652.1 Cannabis sativa PK16652.1 I 0.854
Pm018608 Prunus mume Pm018608 I 0.821
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.821
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.858
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.869
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.855