Bra010460 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra010460 T001054_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8W242_BRANA
M09747_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF_01
0.769 0.980
Q8S2T2_BRANA
M09744_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF17_01
0.769 0.980
A6N8P3_BRANA
M09738_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBI5_01
0.769 0.980
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.692 0.920
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.692 0.920
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.692 0.920
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.692 0.920
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.691 0.940
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.691 0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.685 0.880
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.685 0.880
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.685 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010460.1-P AP2 51 102

Links

Other AP2 family TFs
Other Brassica rapa TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo8g050800 Brassica oleracea Bo8g050800 I 0.813
Q8S2T2_BRANA Brassica napus Q8S2T2_BRANA D 0.769
Q8W242_BRANA Brassica napus Q8W242_BRANA D 0.769
Bra010461 Brassica rapa Bra010461 I 0.769
Bo8g050740 Brassica oleracea Bo8g050740 I 0.769
A6N8P3_BRANA Brassica napus A6N8P3_BRANA D 0.769
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.721
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.719
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.719
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.719
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.719
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.715
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.714
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.714
mgf016974m Mimulus guttatus mgf016974m I 0.713
mgf022408m Mimulus guttatus mgf022408m I 0.713
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.713
mgf018934m Mimulus guttatus mgf018934m I 0.713
mgf018631m Mimulus guttatus mgf018631m I 0.713
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.711
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.709
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.709
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.708
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.704
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.695
DREB1A Arabidopsis thaliana AT4G25480 D 0.692
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.691
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.691
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.691
Bra028290 Brassica rapa Bra028290 I 0.691
DREB1D Arabidopsis thaliana AT5G51990 D 0.691
Bo9g104770 Brassica oleracea Bo9g104770 I 0.691
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.691
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.691
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.691
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.691
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.691
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.691
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.688
30147.m014313 Ricinus communis 30147.m014313 I 0.688
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.688
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.688
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.688
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.688
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.685
DREB1C Arabidopsis thaliana AT4G25470 D 0.685
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.685
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.684
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.684
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.683
mgf026642m Mimulus guttatus mgf026642m I 0.682
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.682
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.681
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
Cla002362 Citrullus lanatus Cla002362 I 0.678
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.678
Aquca_028_00229 Aquilegia coerulea Aquca_028_00229 N 0.677
Bra022770 Brassica rapa Bra022770 I 0.677