Bra010610 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra010610 T001057_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.704 0.824
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.704 0.824
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.678 0.775
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.678 0.775
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010610.1-P AP2 288 339
Bra010610.1-P AP2 381 433

Links

Other AP2 family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.7867s1636 Boechera stricta Bostr.7867s1636 I 0.704
ANT Arabidopsis lyrata scaffold_700297.1 I 0.704
Thhalv10024807m.g Eutrema salsugineum Thhalv10024807m.g I 0.704
ANT Arabidopsis thaliana AT4G37750 D 0.704
Bo7g118740 Brassica oleracea Bo7g118740 I 0.704
Gorai.010G028100 Gossypium raimondii Gorai.010G028100 I 0.692
Bo1g003450 Brassica oleracea Bo1g003450 I 0.690
Cagra.4290s0005 Capsella grandiflora Cagra.4290s0005 I 0.690
Bo3g153310 Brassica oleracea Bo3g153310 I 0.690
Carubv10004485m.g Capsella rubella Carubv10004485m.g I 0.690
Aquca_006_00055 Aquilegia coerulea Aquca_006_00055 I 0.690
Bra017852 Brassica rapa Bra017852 I 0.690
Cucsa.353040 Cucumis sativus Cucsa.353040 I 0.687
Cla010129 Citrullus lanatus Cla010129 I 0.686
POPTR_0007s14690 Populus trichocarpa POPTR_0007s14690 I 0.683
GLYMA04G05080 Glycine max GLYMA04G05080 I 0.683
Solyc04g077490.2 Solanum lycopersicum Solyc04g077490.2 I 0.683
SapurV1A.0004s0270 Salix purpurea SapurV1A.0004s0270 I 0.682
orange1.1g005737m.g Citrus sinensis orange1.1g005737m.g I 0.682
Ciclev10025111m.g Citrus clementina Ciclev10025111m.g I 0.682
GLYMA06G05170 Glycine max GLYMA06G05170 I 0.682
Cucsa.103400 Cucumis sativus Cucsa.103400 I 0.681
Cucsa.395410 Cucumis sativus Cucsa.395410 I 0.680
SapurV1A.0235s0250 Salix purpurea SapurV1A.0235s0250 I 0.678
SapurV1A.0513s0060 Salix purpurea SapurV1A.0513s0060 I 0.678
VIT_18s0001g08610 Vitis vinifera VIT_18s0001g08610 I 0.678
GLYMA0041S50 Glycine max GLYMA0041S50 I 0.678
Aquca_017_00110 Aquilegia coerulea Aquca_017_00110 I 0.678
Q6SA75_TOBAC Nicotiana tabacum Q6SA75_TOBAC D 0.678
MDP0000190889 Malus domestica MDP0000190889 I 0.677
GLYMA17G17010 Glycine max GLYMA17G17010 I 0.677
MDP0000187703 Malus domestica MDP0000187703 I 0.677
GLYMA05G22970 Glycine max GLYMA05G22970 I 0.677
SapurV1A.0608s0160 Salix purpurea SapurV1A.0608s0160 I 0.677
Gorai.008G086000 Gossypium raimondii Gorai.008G086000 I 0.677
Pm005440 Prunus mume Pm005440 I 0.677
mgf026162m Mimulus guttatus mgf026162m I 0.677
TCM_034652 Theobroma cacao TCM_034652 I 0.677
TCM_000844 Theobroma cacao TCM_000844 I 0.677
PRUPE_ppa023077mg Prunus persica PRUPE_ppa023077mg I 0.677
Gorai.007G226500 Gossypium raimondii Gorai.007G226500 I 0.677
MDP0000175309 Malus domestica MDP0000175309 I 0.677