CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra011833
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra011833
T001069_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.840
0.880
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.827
0.860
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.827
0.860
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.711
0.820
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.711
0.820
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.687
0.620
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra011833.1-P
AP2
93
144
KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTYDTAEEAAMAYDQAAYQLRGE
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
450 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy