Bra016518 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra016518 T001100_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.809 0.960
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.809 0.960
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.788 0.900
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.788 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016518.1-P AP2 8 59

Links

Other AP2 family TFs
Other Brassica rapa TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.000
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.000
mgf003626m Mimulus guttatus mgf003626m N 0.000
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.000
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.000
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.000
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.000
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.000
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.000
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.000
MDP0000235160 Malus domestica MDP0000235160 N 0.000
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.000
SapurV1A.0027s0740 Salix purpurea SapurV1A.0027s0740 N 0.000
SapurV1A.4644s0020 Salix purpurea SapurV1A.4644s0020 N 0.000
PK06863.1 Cannabis sativa PK06863.1 N 0.000
LjSGA_045184.1 Lotus japonicus LjSGA_045184.1 N 0.000
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.000
29864.m001444 Ricinus communis 29864.m001444 N 0.000
Pm016510 Prunus mume Pm016510 N 0.000
SIGD Arabidopsis thaliana AT5G13730 N 0.000
Bo2g011520 Brassica oleracea Bo2g011520 N 0.000
Bo9g166510 Brassica oleracea Bo9g166510 N 0.000
Bra008807 Brassica rapa Bra008807 N 0.000
Bra023430 Brassica rapa Bra023430 N 0.000
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.000
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.000
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.000
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.000
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.000
SIG4 Arabidopsis lyrata scaffold_601382.1 N 0.000
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.000
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.000
Ca_22857 Cicer arietinum Ca_22857 N 0.000
Cla017559 Citrullus lanatus Cla017559 N 0.000
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.000